miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9621 5' -58.2 NC_002577.1 + 77281 0.66 0.85114
Target:  5'- cCUGUCGGU--CGaGCACGGCgAUGUCa -3'
miRNA:   3'- -GACGGUCGagGC-CGUGCUGgUACAGc -5'
9621 5' -58.2 NC_002577.1 + 141561 0.66 0.84331
Target:  5'- -aGCCAcgGCUCCGGCAgugcCGGCC-UGg-- -3'
miRNA:   3'- gaCGGU--CGAGGCCGU----GCUGGuACagc -5'
9621 5' -58.2 NC_002577.1 + 155777 0.66 0.84331
Target:  5'- -aGCCAcgGCUCCGGCAgugcCGGCC-UGg-- -3'
miRNA:   3'- gaCGGU--CGAGGCCGU----GCUGGuACagc -5'
9621 5' -58.2 NC_002577.1 + 134312 0.67 0.792709
Target:  5'- -cGCCggcGGCUCC-GCGCGGCCAguagGcCGa -3'
miRNA:   3'- gaCGG---UCGAGGcCGUGCUGGUa---CaGC- -5'
9621 5' -58.2 NC_002577.1 + 163016 0.67 0.792709
Target:  5'- -cGCCggcGGCUCC-GCGCGGCCAguagGcCGa -3'
miRNA:   3'- gaCGG---UCGAGGcCGUGCUGGUa---CaGC- -5'
9621 5' -58.2 NC_002577.1 + 141531 0.68 0.717785
Target:  5'- gCUGCCGGCgucgccaCGGUugGACCGgcgCGc -3'
miRNA:   3'- -GACGGUCGag-----GCCGugCUGGUacaGC- -5'
9621 5' -58.2 NC_002577.1 + 155806 0.68 0.717785
Target:  5'- gCUGCCGGCgucgccaCGGUugGACCGgcgCGc -3'
miRNA:   3'- -GACGGUCGag-----GCCGugCUGGUacaGC- -5'
9621 5' -58.2 NC_002577.1 + 10299 0.69 0.658386
Target:  5'- -gGCCGGCU-CGGCGCGAgCCGgccUCGg -3'
miRNA:   3'- gaCGGUCGAgGCCGUGCU-GGUac-AGC- -5'
9621 5' -58.2 NC_002577.1 + 123315 0.69 0.658386
Target:  5'- -gGCCGGCU-CGGCGCGAgCCGgccUCGg -3'
miRNA:   3'- gaCGGUCGAgGCCGUGCU-GGUac-AGC- -5'
9621 5' -58.2 NC_002577.1 + 121776 0.7 0.59824
Target:  5'- -cGCCuGCUCCGGCGCG-CCGaG-CGc -3'
miRNA:   3'- gaCGGuCGAGGCCGUGCuGGUaCaGC- -5'
9621 5' -58.2 NC_002577.1 + 5053 0.7 0.59824
Target:  5'- -gGCCgAGCaUCGGCGCGcgcGCCGUGUCc -3'
miRNA:   3'- gaCGG-UCGaGGCCGUGC---UGGUACAGc -5'
9621 5' -58.2 NC_002577.1 + 128561 0.7 0.59824
Target:  5'- -gGCCgAGCaUCGGCGCGcgcGCCGUGUCc -3'
miRNA:   3'- gaCGG-UCGaGGCCGUGC---UGGUACAGc -5'
9621 5' -58.2 NC_002577.1 + 158410 0.71 0.572354
Target:  5'- -cGUCAGCcgUCCGGCGCGAgggacgacggagcgcCCAUGUUu -3'
miRNA:   3'- gaCGGUCG--AGGCCGUGCU---------------GGUACAGc -5'
9621 5' -58.2 NC_002577.1 + 138928 0.71 0.572354
Target:  5'- -cGUCAGCcgUCCGGCGCGAgggacgacggagcgcCCAUGUUu -3'
miRNA:   3'- gaCGGUCG--AGGCCGUGCU---------------GGUACAGc -5'
9621 5' -58.2 NC_002577.1 + 11922 0.71 0.548701
Target:  5'- -cGCCuGCUCCGGCGCG-CCGaGcgCGa -3'
miRNA:   3'- gaCGGuCGAGGCCGUGCuGGUaCa-GC- -5'
9621 5' -58.2 NC_002577.1 + 60971 0.72 0.491095
Target:  5'- uCUGCCcaccGGCggUCGGUACGACCGUGgucCGg -3'
miRNA:   3'- -GACGG----UCGa-GGCCGUGCUGGUACa--GC- -5'
9621 5' -58.2 NC_002577.1 + 74256 1.1 0.001764
Target:  5'- aCUGCCAGCUCCGGCACGACCAUGUCGg -3'
miRNA:   3'- -GACGGUCGAGGCCGUGCUGGUACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.