miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9622 3' -56.9 NC_002577.1 + 6657 0.66 0.877729
Target:  5'- cGAGAGGCGuGGgGGgGGg-GGGAGgCCu -3'
miRNA:   3'- -UUUUUCGU-CCgCCgCCagCCCUCaGG- -5'
9622 3' -56.9 NC_002577.1 + 126956 0.66 0.877729
Target:  5'- cGAGAGGCGuGGgGGgGGg-GGGAGgCCu -3'
miRNA:   3'- -UUUUUCGU-CCgCCgCCagCCCUCaGG- -5'
9622 3' -56.9 NC_002577.1 + 133402 0.66 0.877017
Target:  5'- ----cGCGGGCugagugcaccuguGGCGG-CGGGAGgCUg -3'
miRNA:   3'- uuuuuCGUCCG-------------CCGCCaGCCCUCaGG- -5'
9622 3' -56.9 NC_002577.1 + 212 0.66 0.877017
Target:  5'- ----cGCGGGCugagugcaccuguGGCGG-CGGGAGgCUg -3'
miRNA:   3'- uuuuuCGUCCG-------------CCGCCaGCCCUCaGG- -5'
9622 3' -56.9 NC_002577.1 + 155265 0.66 0.870512
Target:  5'- gGAGGGGguGGUGGUGGUUGGaGAc--- -3'
miRNA:   3'- -UUUUUCguCCGCCGCCAGCC-CUcagg -5'
9622 3' -56.9 NC_002577.1 + 155224 0.66 0.870512
Target:  5'- gGAGGGGguGGUGGUGGUUGGaGAc--- -3'
miRNA:   3'- -UUUUUCguCCGCCGCCAGCC-CUcagg -5'
9622 3' -56.9 NC_002577.1 + 142115 0.66 0.870512
Target:  5'- gGAGGGGguGGUGGUGGUUGGaGAc--- -3'
miRNA:   3'- -UUUUUCguCCGCCGCCAGCC-CUcagg -5'
9622 3' -56.9 NC_002577.1 + 142074 0.66 0.870512
Target:  5'- gGAGGGGguGGUGGUGGUUGGaGAc--- -3'
miRNA:   3'- -UUUUUCguCCGCCGCCAGCC-CUcagg -5'
9622 3' -56.9 NC_002577.1 + 16502 0.66 0.863084
Target:  5'- uGAGGGCGGGgGGguUGGcCGGGAGg-- -3'
miRNA:   3'- uUUUUCGUCCgCC--GCCaGCCCUCagg -5'
9622 3' -56.9 NC_002577.1 + 162932 0.66 0.855449
Target:  5'- ----uGCcGGCGGCGG-CaGGGGGUUUc -3'
miRNA:   3'- uuuuuCGuCCGCCGCCaG-CCCUCAGG- -5'
9622 3' -56.9 NC_002577.1 + 134395 0.66 0.855449
Target:  5'- ----uGCcGGCGGCGG-CaGGGGGUUUc -3'
miRNA:   3'- uuuuuCGuCCGCCGCCaG-CCCUCAGG- -5'
9622 3' -56.9 NC_002577.1 + 142196 0.67 0.847615
Target:  5'- -uGGAGgGGGUGGUGGU-GGGAGa-- -3'
miRNA:   3'- uuUUUCgUCCGCCGCCAgCCCUCagg -5'
9622 3' -56.9 NC_002577.1 + 155143 0.67 0.847615
Target:  5'- -uGGAGgGGGUGGUGGU-GGGAGa-- -3'
miRNA:   3'- uuUUUCgUCCGCCGCCAgCCCUCagg -5'
9622 3' -56.9 NC_002577.1 + 9174 0.67 0.847615
Target:  5'- ---uGGCGauGGCgcgGGCGG--GGGAGUCCg -3'
miRNA:   3'- uuuuUCGU--CCG---CCGCCagCCCUCAGG- -5'
9622 3' -56.9 NC_002577.1 + 124440 0.67 0.847615
Target:  5'- ---uGGCGauGGCgcgGGCGG--GGGAGUCCg -3'
miRNA:   3'- uuuuUCGU--CCG---CCGCCagCCCUCAGG- -5'
9622 3' -56.9 NC_002577.1 + 131054 0.67 0.838775
Target:  5'- uAGGGGCAGGggaGGCguuuaggGGUCGGGucgGGUUCg -3'
miRNA:   3'- uUUUUCGUCCg--CCG-------CCAGCCC---UCAGG- -5'
9622 3' -56.9 NC_002577.1 + 2560 0.67 0.838775
Target:  5'- uAGGGGCAGGggaGGCguuuaggGGUCGGGucgGGUUCg -3'
miRNA:   3'- uUUUUCGUCCg--CCG-------CCAGCCC---UCAGG- -5'
9622 3' -56.9 NC_002577.1 + 135442 0.67 0.831374
Target:  5'- ---uGGCuGGGCGuGCGGaUCGGGGGg-- -3'
miRNA:   3'- uuuuUCG-UCCGC-CGCC-AGCCCUCagg -5'
9622 3' -56.9 NC_002577.1 + 161896 0.67 0.831374
Target:  5'- ---uGGCuGGGCGuGCGGaUCGGGGGg-- -3'
miRNA:   3'- uuuuUCG-UCCGC-CGCC-AGCCCUCagg -5'
9622 3' -56.9 NC_002577.1 + 130565 0.67 0.822981
Target:  5'- cGAGGGUAGGCGcagaggaaaucGCGGUCGcuguGGAcUCCg -3'
miRNA:   3'- uUUUUCGUCCGC-----------CGCCAGC----CCUcAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.