miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9634 3' -59 NC_002577.1 + 4790 0.68 0.727552
Target:  5'- --gGGACGgCGCGGCGucgucGCGCGccgcGGa -3'
miRNA:   3'- uagCCUGCgGCGCCGCu----UGCGCau--CC- -5'
9634 3' -59 NC_002577.1 + 5448 0.66 0.817518
Target:  5'- cGUCGGAUGCgG-GGCGAugaGCGgGUauuuAGGc -3'
miRNA:   3'- -UAGCCUGCGgCgCCGCU---UGCgCA----UCC- -5'
9634 3' -59 NC_002577.1 + 7536 0.67 0.77401
Target:  5'- -gCGGAcaucaCGCCGgGGuCGAACGCGg--- -3'
miRNA:   3'- uaGCCU-----GCGGCgCC-GCUUGCGCaucc -5'
9634 3' -59 NC_002577.1 + 9029 0.68 0.688953
Target:  5'- -cCGaGGC-CCGCGGUGcGCGCGaAGGg -3'
miRNA:   3'- uaGC-CUGcGGCGCCGCuUGCGCaUCC- -5'
9634 3' -59 NC_002577.1 + 9915 0.69 0.649648
Target:  5'- -aUGGACggGCCGCGGCGu-CGCGgcGu -3'
miRNA:   3'- uaGCCUG--CGGCGCCGCuuGCGCauCc -5'
9634 3' -59 NC_002577.1 + 10100 0.66 0.825778
Target:  5'- -cCGcGACGCCGCGGCccguccaugugGuAAUGCG-GGGa -3'
miRNA:   3'- uaGC-CUGCGGCGCCG-----------C-UUGCGCaUCC- -5'
9634 3' -59 NC_002577.1 + 10690 0.67 0.746424
Target:  5'- -cCGGACGCCGCGaGgGu-CGCGgcccgaAGGc -3'
miRNA:   3'- uaGCCUGCGGCGC-CgCuuGCGCa-----UCC- -5'
9634 3' -59 NC_002577.1 + 11054 0.67 0.746424
Target:  5'- -cCGGGCGaaccgCGCGGCGAACGaacccguccCGUuGGGa -3'
miRNA:   3'- uaGCCUGCg----GCGCCGCUUGC---------GCA-UCC- -5'
9634 3' -59 NC_002577.1 + 11396 1.08 0.002352
Target:  5'- gAUCGGACGCCGCGGCGAACGCGUAGGu -3'
miRNA:   3'- -UAGCCUGCGGCGCCGCUUGCGCAUCC- -5'
9634 3' -59 NC_002577.1 + 11736 0.66 0.799668
Target:  5'- -cCGGACGCCGgagagaacgacgcCGGaGGGCGCGgaccGGGc -3'
miRNA:   3'- uaGCCUGCGGC-------------GCCgCUUGCGCa---UCC- -5'
9634 3' -59 NC_002577.1 + 11880 0.68 0.717997
Target:  5'- -cCGGGCGacgacCCGgGcGCGGACGCGgacgAGGc -3'
miRNA:   3'- uaGCCUGC-----GGCgC-CGCUUGCGCa---UCC- -5'
9634 3' -59 NC_002577.1 + 19845 0.7 0.590437
Target:  5'- uUCGG-CGCCGCacucGCcGACGCGUAGa -3'
miRNA:   3'- uAGCCuGCGGCGc---CGcUUGCGCAUCc -5'
9634 3' -59 NC_002577.1 + 23600 0.7 0.600273
Target:  5'- --aGGACGUguugaGCGGCGAACGUGgcGa -3'
miRNA:   3'- uagCCUGCGg----CGCCGCUUGCGCauCc -5'
9634 3' -59 NC_002577.1 + 25638 0.66 0.817518
Target:  5'- gAUUGGugGaC-CGGCGAACGCG-AGa -3'
miRNA:   3'- -UAGCCugCgGcGCCGCUUGCGCaUCc -5'
9634 3' -59 NC_002577.1 + 69041 0.66 0.817518
Target:  5'- aGUUaGACGUgGUGGCGGAagcCGCGUuGGGg -3'
miRNA:   3'- -UAGcCUGCGgCGCCGCUU---GCGCA-UCC- -5'
9634 3' -59 NC_002577.1 + 75317 0.66 0.817518
Target:  5'- -aCGuGACGCCGCGucGCGAgguuuuagaGCGgGUAGc -3'
miRNA:   3'- uaGC-CUGCGGCGC--CGCU---------UGCgCAUCc -5'
9634 3' -59 NC_002577.1 + 78427 0.65 0.84647
Target:  5'- cGUCGGACucgaauuGCCGaCcgaugaguuuaacgGGCGGA-GCGUGGGa -3'
miRNA:   3'- -UAGCCUG-------CGGC-G--------------CCGCUUgCGCAUCC- -5'
9634 3' -59 NC_002577.1 + 81268 0.68 0.737031
Target:  5'- --aGGugGCCGCgGGCGuGGCGCagcacgGGGa -3'
miRNA:   3'- uagCCugCGGCG-CCGC-UUGCGca----UCC- -5'
9634 3' -59 NC_002577.1 + 85990 0.72 0.467145
Target:  5'- -aCGGuuuacCGCCGUGGCGAGcCGCGUGc- -3'
miRNA:   3'- uaGCCu----GCGGCGCCGCUU-GCGCAUcc -5'
9634 3' -59 NC_002577.1 + 97557 0.75 0.350893
Target:  5'- -aCGGACGCCGaGGCGAcGCGCGaAGa -3'
miRNA:   3'- uaGCCUGCGGCgCCGCU-UGCGCaUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.