Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9634 | 3' | -59 | NC_002577.1 | + | 11396 | 1.08 | 0.002352 |
Target: 5'- gAUCGGACGCCGCGGCGAACGCGUAGGu -3' miRNA: 3'- -UAGCCUGCGGCGCCGCUUGCGCAUCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 11736 | 0.66 | 0.799668 |
Target: 5'- -cCGGACGCCGgagagaacgacgcCGGaGGGCGCGgaccGGGc -3' miRNA: 3'- uaGCCUGCGGC-------------GCCgCUUGCGCa---UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 69041 | 0.66 | 0.817518 |
Target: 5'- aGUUaGACGUgGUGGCGGAagcCGCGUuGGGg -3' miRNA: 3'- -UAGcCUGCGgCGCCGCUU---GCGCA-UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 160705 | 0.66 | 0.841015 |
Target: 5'- -cCGGAgGCCaUGGCGGAgaucgcuCGCGUGGc -3' miRNA: 3'- uaGCCUgCGGcGCCGCUU-------GCGCAUCc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 23600 | 0.7 | 0.600273 |
Target: 5'- --aGGACGUguugaGCGGCGAACGUGgcGa -3' miRNA: 3'- uagCCUGCGg----CGCCGCUUGCGCauCc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 9915 | 0.69 | 0.649648 |
Target: 5'- -aUGGACggGCCGCGGCGu-CGCGgcGu -3' miRNA: 3'- uaGCCUG--CGGCGCCGCuuGCGCauCc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 124585 | 0.68 | 0.688953 |
Target: 5'- -cCGaGGC-CCGCGGUGcGCGCGaAGGg -3' miRNA: 3'- uaGC-CUGcGGCGCCGCuUGCGCaUCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 137575 | 0.68 | 0.708373 |
Target: 5'- -cCGcGACGCCcCGGCGcACGCGgucguGGa -3' miRNA: 3'- uaGC-CUGCGGcGCCGCuUGCGCau---CC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 10690 | 0.67 | 0.746424 |
Target: 5'- -cCGGACGCCGCGaGgGu-CGCGgcccgaAGGc -3' miRNA: 3'- uaGCCUGCGGCGC-CgCuuGCGCa-----UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 139253 | 0.67 | 0.780302 |
Target: 5'- aGUUGGAggcauagaagcCGCCGCGGCGccggcugcagucgaGAcCGCGgGGGg -3' miRNA: 3'- -UAGCCU-----------GCGGCGCCGC--------------UU-GCGCaUCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 102691 | 0.67 | 0.746424 |
Target: 5'- -cUGGACGCgCGuCGGCGAACcuCGUgaccGGGa -3' miRNA: 3'- uaGCCUGCG-GC-GCCGCUUGc-GCA----UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 128823 | 0.68 | 0.727552 |
Target: 5'- --gGGACGgCGCGGCGucgucGCGCGccgcGGa -3' miRNA: 3'- uagCCUGCgGCGCCGCu----UGCGCau--CC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 97557 | 0.75 | 0.350893 |
Target: 5'- -aCGGACGCCGaGGCGAcGCGCGaAGa -3' miRNA: 3'- uaGCCUGCGGCgCCGCU-UGCGCaUCc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 160166 | 0.67 | 0.755724 |
Target: 5'- -gCGGACGCCgacGCGGCcucuuccgGAACGUccgAGGg -3' miRNA: 3'- uaGCCUGCGG---CGCCG--------CUUGCGca-UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 138775 | 0.73 | 0.449304 |
Target: 5'- aAUCGGcguaGCGCCGCGGCGGugacggcgGCGCGc--- -3' miRNA: 3'- -UAGCC----UGCGGCGCCGCU--------UGCGCaucc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 11880 | 0.68 | 0.717997 |
Target: 5'- -cCGGGCGacgacCCGgGcGCGGACGCGgacgAGGc -3' miRNA: 3'- uaGCCUGC-----GGCgC-CGCUUGCGCa---UCC- -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 7536 | 0.67 | 0.77401 |
Target: 5'- -gCGGAcaucaCGCCGgGGuCGAACGCGg--- -3' miRNA: 3'- uaGCCU-----GCGGCgCC-GCUUGCGCaucc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 25638 | 0.66 | 0.817518 |
Target: 5'- gAUUGGugGaC-CGGCGAACGCG-AGa -3' miRNA: 3'- -UAGCCugCgGcGCCGCUUGCGCaUCc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 19845 | 0.7 | 0.590437 |
Target: 5'- uUCGG-CGCCGCacucGCcGACGCGUAGa -3' miRNA: 3'- uAGCCuGCGGCGc---CGcUUGCGCAUCc -5' |
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9634 | 3' | -59 | NC_002577.1 | + | 139024 | 0.69 | 0.669357 |
Target: 5'- --gGGAgCGCgGUGGCGGGCGgGgGGGg -3' miRNA: 3'- uagCCU-GCGgCGCCGCUUGCgCaUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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