miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 142212 0.78 0.045553
Target:  5'- cAC-CACCaCCCCCCCCCCCCC-CCAa -3'
miRNA:   3'- -UGuGUGGgGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 962 0.78 0.046008
Target:  5'- -aGCGCCgcaucccccccucaaCCCCCCCCCCCCCCGUgAUu -3'
miRNA:   3'- ugUGUGG---------------GGGGGGGGGGGGGGCGgUA- -5'
9640 5' -70.1 NC_002577.1 + 132648 0.77 0.048959
Target:  5'- cCGCAUCCCCcccucaaCCCCCCCCCCCcCCGUa -3'
miRNA:   3'- uGUGUGGGGG-------GGGGGGGGGGGcGGUA- -5'
9640 5' -70.1 NC_002577.1 + 135183 0.77 0.052876
Target:  5'- -gACucCCCCCgCCCCCCCCCCCGaCCu- -3'
miRNA:   3'- ugUGu-GGGGG-GGGGGGGGGGGC-GGua -5'
9640 5' -70.1 NC_002577.1 + 143729 0.77 0.052876
Target:  5'- cACAUACCCCCCCUCCCCcagCCCCGaCGa -3'
miRNA:   3'- -UGUGUGGGGGGGGGGGG---GGGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 131803 0.77 0.054203
Target:  5'- ----cCCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGCggua -5'
9640 5' -70.1 NC_002577.1 + 1810 0.77 0.054203
Target:  5'- ----cCCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGCggua -5'
9640 5' -70.1 NC_002577.1 + 156634 0.76 0.056533
Target:  5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5'
9640 5' -70.1 NC_002577.1 + 140704 0.76 0.056533
Target:  5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5'
9640 5' -70.1 NC_002577.1 + 1731 0.75 0.069376
Target:  5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3'
miRNA:   3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5'
9640 5' -70.1 NC_002577.1 + 131882 0.75 0.069377
Target:  5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3'
miRNA:   3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5'
9640 5' -70.1 NC_002577.1 + 156429 0.75 0.071102
Target:  5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3'
miRNA:   3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 140909 0.75 0.071102
Target:  5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3'
miRNA:   3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 9944 0.74 0.086465
Target:  5'- cCACACCCCUCCaccgaccaugCCCCaCCCCCGCUc- -3'
miRNA:   3'- uGUGUGGGGGGG----------GGGG-GGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 123670 0.74 0.086465
Target:  5'- cCACACCCCUCCaccgaccaugCCCCaCCCCCGCUc- -3'
miRNA:   3'- uGUGUGGGGGGG----------GGGG-GGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 139836 0.74 0.090775
Target:  5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3'
miRNA:   3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 124719 0.74 0.090775
Target:  5'- cACGCAUUCCCggucgcccgucgCCCCCCCCCUCGCaCAUc -3'
miRNA:   3'- -UGUGUGGGGG------------GGGGGGGGGGGCG-GUA- -5'
9640 5' -70.1 NC_002577.1 + 8895 0.74 0.090775
Target:  5'- cACGCAUUCCCggucgcccgucgCCCCCCCCCUCGCaCAUc -3'
miRNA:   3'- -UGUGUGGGGG------------GGGGGGGGGGGCG-GUA- -5'
9640 5' -70.1 NC_002577.1 + 157502 0.74 0.090775
Target:  5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3'
miRNA:   3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 140775 0.73 0.100012
Target:  5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3'
miRNA:   3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.