miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 8656 0.67 0.269778
Target:  5'- cACACACCCCCacacacaCCCCCacacaCCCCCacacacaccgcgGCUAc -3'
miRNA:   3'- -UGUGUGGGGG-------GGGGGg----GGGGG------------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 8817 0.66 0.300955
Target:  5'- uGCGCguGCCCCUCCCCCaacuaaCCCUUCGCgCGc -3'
miRNA:   3'- -UGUG--UGGGGGGGGGG------GGGGGGCG-GUa -5'
9640 5' -70.1 NC_002577.1 + 8895 0.74 0.090775
Target:  5'- cACGCAUUCCCggucgcccgucgCCCCCCCCCUCGCaCAUc -3'
miRNA:   3'- -UGUGUGGGGG------------GGGGGGGGGGGCG-GUA- -5'
9640 5' -70.1 NC_002577.1 + 8978 0.68 0.221674
Target:  5'- uACGCACggaCUCCCCCgCCCgCGCCAUc -3'
miRNA:   3'- -UGUGUGgg-GGGGGGGgGGGgGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 9438 0.68 0.242326
Target:  5'- aACGCAaacgucuuuUCCCCUCCCCCCCgaUCCGgCAg -3'
miRNA:   3'- -UGUGU---------GGGGGGGGGGGGG--GGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 9694 0.78 0.044432
Target:  5'- ----uCCCCCCCCCCCCCCCCaaGCCc- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGG--CGGua -5'
9640 5' -70.1 NC_002577.1 + 9944 0.74 0.086465
Target:  5'- cCACACCCCUCCaccgaccaugCCCCaCCCCCGCUc- -3'
miRNA:   3'- uGUGUGGGGGGG----------GGGG-GGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 10724 0.68 0.226692
Target:  5'- gGguCGCCCCCCgacuuuCCCCCCggCCCCGCa-- -3'
miRNA:   3'- -UguGUGGGGGG------GGGGGG--GGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 11451 0.7 0.160891
Target:  5'- cACACAUCCUCCCgCCCCCacaaccuccuCCCCGgCGg -3'
miRNA:   3'- -UGUGUGGGGGGG-GGGGG----------GGGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 11534 0.69 0.184858
Target:  5'- gGC-UACCCUCCCUCCCCCCUCuCCu- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 11562 0.67 0.281684
Target:  5'- ----uCCCCCCCUCCCCCuucuucuCCCGuCCGa -3'
miRNA:   3'- uguguGGGGGGGGGGGGG-------GGGC-GGUa -5'
9640 5' -70.1 NC_002577.1 + 50953 0.66 0.327302
Target:  5'- uCGCGCCCCCCauucgCCCUUCUCCCGagGUa -3'
miRNA:   3'- uGUGUGGGGGG-----GGGGGGGGGGCggUA- -5'
9640 5' -70.1 NC_002577.1 + 75222 0.69 0.193523
Target:  5'- cGCACGCCCUCUCCCCagCUUUCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGGGGGg-GGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 83166 0.67 0.288408
Target:  5'- -aGCgACUCgUCCCCUUCCCCCGCUAc -3'
miRNA:   3'- ugUG-UGGGgGGGGGGGGGGGGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 122052 0.67 0.281684
Target:  5'- ----uCCCCCCCUCCCCCuucuucuCCCGuCCGa -3'
miRNA:   3'- uguguGGGGGGGGGGGGG-------GGGC-GGUa -5'
9640 5' -70.1 NC_002577.1 + 122080 0.69 0.184858
Target:  5'- gGC-UACCCUCCCUCCCCCCUCuCCu- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 122163 0.7 0.160891
Target:  5'- cACACAUCCUCCCgCCCCCacaaccuccuCCCCGgCGg -3'
miRNA:   3'- -UGUGUGGGGGGG-GGGGG----------GGGGCgGUa -5'
9640 5' -70.1 NC_002577.1 + 122889 0.68 0.226692
Target:  5'- gGguCGCCCCCCgacuuuCCCCCCggCCCCGCa-- -3'
miRNA:   3'- -UguGUGGGGGG------GGGGGG--GGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 123670 0.74 0.086465
Target:  5'- cCACACCCCUCCaccgaccaugCCCCaCCCCCGCUc- -3'
miRNA:   3'- uGUGUGGGGGGG----------GGGG-GGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 123919 0.78 0.044432
Target:  5'- ----uCCCCCCCCCCCCCCCCaaGCCc- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGG--CGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.