miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 962 0.78 0.046008
Target:  5'- -aGCGCCgcaucccccccucaaCCCCCCCCCCCCCCGUgAUu -3'
miRNA:   3'- ugUGUGG---------------GGGGGGGGGGGGGGCGgUA- -5'
9640 5' -70.1 NC_002577.1 + 1731 0.75 0.069376
Target:  5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3'
miRNA:   3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5'
9640 5' -70.1 NC_002577.1 + 1810 0.77 0.054203
Target:  5'- ----cCCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGCggua -5'
9640 5' -70.1 NC_002577.1 + 2519 0.9 0.004939
Target:  5'- cCACACCCCCCCCCCCCCCCCGaaaaCCGa -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGC----GGUa -5'
9640 5' -70.1 NC_002577.1 + 3591 0.68 0.231806
Target:  5'- cACGgGCCCUCUCUCgCCCCUCCGCg-- -3'
miRNA:   3'- -UGUgUGGGGGGGGG-GGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 3696 0.71 0.133302
Target:  5'- --cCGCCCCCCCCCCCCCacauaggaaCCucuguuccauCGCCAUc -3'
miRNA:   3'- uguGUGGGGGGGGGGGGG---------GG----------GCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 4068 0.71 0.146505
Target:  5'- cGCAUAUCCCCCCCaCCCCCCUuCGaugguCCGg -3'
miRNA:   3'- -UGUGUGGGGGGGG-GGGGGGG-GC-----GGUa -5'
9640 5' -70.1 NC_002577.1 + 4420 0.66 0.300955
Target:  5'- cACGCGCCCCCCCauaCUcggcgcgcguaCCCgCgGCCAUc -3'
miRNA:   3'- -UGUGUGGGGGGGg--GG-----------GGGgGgCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 5905 0.66 0.31392
Target:  5'- ----cCCCCCCCCUCCCCUCUuCCu- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 6027 0.68 0.221674
Target:  5'- ----uUCUCCCCCCCCCCUCC-CCAc -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 6083 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 6122 0.68 0.237017
Target:  5'- ---aGCCUUCCCCCUCCCCCCuCCc- -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 6465 0.83 0.01711
Target:  5'- uCAgGCCUCCCCCCCCCCCCaCGCCu- -3'
miRNA:   3'- uGUgUGGGGGGGGGGGGGGG-GCGGua -5'
9640 5' -70.1 NC_002577.1 + 6997 0.71 0.139761
Target:  5'- aACuCAgCCCCCCCUCCCCUCaCGaCCAUu -3'
miRNA:   3'- -UGuGUgGGGGGGGGGGGGGG-GC-GGUA- -5'
9640 5' -70.1 NC_002577.1 + 7137 0.81 0.026264
Target:  5'- cGCAUcuCCCCCCCCCCCCCCCCuCCc- -3'
miRNA:   3'- -UGUGu-GGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 7446 0.66 0.327302
Target:  5'- aGCAUGCCCUguaCCCCaCCCCCCUuCUAa -3'
miRNA:   3'- -UGUGUGGGGg--GGGG-GGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 7577 0.67 0.280475
Target:  5'- cCAUuuaucuuCCCCCCCgcguaaacaauuauCCCUCCCCCGCgCGUc -3'
miRNA:   3'- uGUGu------GGGGGGG--------------GGGGGGGGGCG-GUA- -5'
9640 5' -70.1 NC_002577.1 + 7645 0.71 0.133302
Target:  5'- uGCGCGaaugcgucuuuCCCCCUuccaaggccuaaCCCCCCCCCCGCg-- -3'
miRNA:   3'- -UGUGU-----------GGGGGG------------GGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 7776 0.86 0.01085
Target:  5'- cGCACGguucggaucccCCCCCCCCCCCCCCCCGCa-- -3'
miRNA:   3'- -UGUGU-----------GGGGGGGGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 8307 1.04 0.000451
Target:  5'- cACACACCCCCCCCCCCCCCCCGCCAUc -3'
miRNA:   3'- -UGUGUGGGGGGGGGGGGGGGGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.