miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 8307 1.04 0.000451
Target:  5'- cACACACCCCCCCCCCCCCCCCGCCAUc -3'
miRNA:   3'- -UGUGUGGGGGGGGGGGGGGGGCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 157502 0.74 0.090775
Target:  5'- aACGaguGCCCgCUCCCCCUCCCCGCCc- -3'
miRNA:   3'- -UGUg--UGGGgGGGGGGGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 156563 0.73 0.100012
Target:  5'- uACGcCACCCCCCCuuagCCCCCCUCCuccuacGCCAc -3'
miRNA:   3'- -UGU-GUGGGGGGG----GGGGGGGGG------CGGUa -5'
9640 5' -70.1 NC_002577.1 + 141503 0.66 0.334151
Target:  5'- cGCAUcgcuucuuGCCCCCCgCCCaacaccaccaCCaCCCCGCCc- -3'
miRNA:   3'- -UGUG--------UGGGGGGgGGG----------GG-GGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 125837 0.86 0.01085
Target:  5'- cGCACGguucggaucccCCCCCCCCCCCCCCCCGCa-- -3'
miRNA:   3'- -UGUGU-----------GGGGGGGGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 134369 0.84 0.013977
Target:  5'- cAC-CACCCCCCCCCCCCCCCCGa--- -3'
miRNA:   3'- -UGuGUGGGGGGGGGGGGGGGGCggua -5'
9640 5' -70.1 NC_002577.1 + 7137 0.81 0.026264
Target:  5'- cGCAUcuCCCCCCCCCCCCCCCCuCCc- -3'
miRNA:   3'- -UGUGu-GGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 123919 0.78 0.044432
Target:  5'- ----uCCCCCCCCCCCCCCCCaaGCCc- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGG--CGGua -5'
9640 5' -70.1 NC_002577.1 + 135183 0.77 0.052876
Target:  5'- -gACucCCCCCgCCCCCCCCCCCGaCCu- -3'
miRNA:   3'- ugUGu-GGGGG-GGGGGGGGGGGC-GGua -5'
9640 5' -70.1 NC_002577.1 + 9944 0.74 0.086465
Target:  5'- cCACACCCCUCCaccgaccaugCCCCaCCCCCGCUc- -3'
miRNA:   3'- uGUGUGGGGGGG----------GGGG-GGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 156634 0.76 0.056533
Target:  5'- cGCAUACCCCCCCuccgcacgguucccCUCCCCCCaCGCCu- -3'
miRNA:   3'- -UGUGUGGGGGGG--------------GGGGGGGG-GCGGua -5'
9640 5' -70.1 NC_002577.1 + 962 0.78 0.046008
Target:  5'- -aGCGCCgcaucccccccucaaCCCCCCCCCCCCCCGUgAUu -3'
miRNA:   3'- ugUGUGG---------------GGGGGGGGGGGGGGCGgUA- -5'
9640 5' -70.1 NC_002577.1 + 2519 0.9 0.004939
Target:  5'- cCACACCCCCCCCCCCCCCCCGaaaaCCGa -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGC----GGUa -5'
9640 5' -70.1 NC_002577.1 + 131882 0.75 0.069377
Target:  5'- -aGCgACCCucuCCCCCCCCCCCCC-CCAUu -3'
miRNA:   3'- ugUG-UGGG---GGGGGGGGGGGGGcGGUA- -5'
9640 5' -70.1 NC_002577.1 + 134171 0.9 0.005331
Target:  5'- uCGCGCCCCCCCCCCCCCCCC-CCGa -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 155127 0.78 0.045553
Target:  5'- cAC-CACCaCCCCCCCCCCCCC-CCAa -3'
miRNA:   3'- -UGuGUGGgGGGGGGGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 156429 0.75 0.071102
Target:  5'- gGCGUGCCCCCCCCaCCCCCCC-CCGa -3'
miRNA:   3'- -UGUGUGGGGGGGGgGGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 8895 0.74 0.090775
Target:  5'- cACGCAUUCCCggucgcccgucgCCCCCCCCCUCGCaCAUc -3'
miRNA:   3'- -UGUGUGGGGG------------GGGGGGGGGGGCG-GUA- -5'
9640 5' -70.1 NC_002577.1 + 142295 0.88 0.007607
Target:  5'- cCGCGCCCCCCCCCCCCCCCCcCCc- -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 6465 0.83 0.01711
Target:  5'- uCAgGCCUCCCCCCCCCCCCaCGCCu- -3'
miRNA:   3'- uGUgUGGGGGGGGGGGGGGG-GCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.