miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9642 5' -45.5 NC_002577.1 + 9102 0.69 0.999259
Target:  5'- -gCGGGA---UGUgcgAGggGGGGGGc -3'
miRNA:   3'- uaGCCUUuaaAUAaa-UCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 9512 0.68 0.999771
Target:  5'- cUUGGggGg------GGggGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 11756 0.73 0.988879
Target:  5'- gGUCGGAcggGAgaagaaggGGGAGGGGGGg -3'
miRNA:   3'- -UAGCCU---UUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 37171 0.74 0.978107
Target:  5'- -aCGGguGUgUGUaUAGggGGGGGGg -3'
miRNA:   3'- uaGCCuuUAaAUAaAUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 43496 0.67 0.999891
Target:  5'- cAUCGGcuucgggGUUUAuAAGGGGGGg -3'
miRNA:   3'- -UAGCCuuuaaa-UAAAUcUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 80830 0.7 0.997965
Target:  5'- gGUCGGcAAUUUAcgUUGGAuGuGGGGGUc -3'
miRNA:   3'- -UAGCCuUUAAAUa-AAUCUuC-CCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 104939 0.69 0.999259
Target:  5'- --aGGAAGaucAUcUAGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaaUAaAUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 121857 0.73 0.988879
Target:  5'- gGUCGGAcggGAgaagaaggGGGAGGGGGGg -3'
miRNA:   3'- -UAGCCU---UUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 124102 0.68 0.999771
Target:  5'- cUUGGggGg------GGggGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 124512 0.69 0.999259
Target:  5'- -gCGGGA---UGUgcgAGggGGGGGGc -3'
miRNA:   3'- uaGCCUUuaaAUAaa-UCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 125120 0.72 0.994314
Target:  5'- -gCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- uaGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 126035 0.7 0.998317
Target:  5'- -gCGGggGggg----GGggGGGGGGg -3'
miRNA:   3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 126178 0.67 0.999897
Target:  5'- -gCGGggGgggggUUAggccUUGGAAGGGGGa- -3'
miRNA:   3'- uaGCCuuUa----AAUa---AAUCUUCCCCCca -5'
9642 5' -45.5 NC_002577.1 + 126279 0.69 0.999192
Target:  5'- -aUGGggGggggaggGGggGGGGGGg -3'
miRNA:   3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 126374 1.07 0.036845
Target:  5'- gAUCGGAAAUUUAUUUAGAAGGGGGGUg -3'
miRNA:   3'- -UAGCCUUUAAAUAAAUCUUCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 126419 0.67 0.999922
Target:  5'- --aGGAAAauggUcgUgagGGGAGGGGGGg -3'
miRNA:   3'- uagCCUUUaa--AuaAa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 126953 0.7 0.997965
Target:  5'- aGUCGaGAGGcgUGg--GGggGGGGGGa -3'
miRNA:   3'- -UAGC-CUUUaaAUaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127292 0.71 0.997274
Target:  5'- -aCGGAGGggggagaaGGGAGGGGGGa -3'
miRNA:   3'- uaGCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127331 0.71 0.997274
Target:  5'- -aCGGAGGggggagaaGGGAGGGGGGa -3'
miRNA:   3'- uaGCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127370 0.69 0.999082
Target:  5'- -aCGGAGGUggg---AGAAGGGGGa- -3'
miRNA:   3'- uaGCCUUUAaauaaaUCUUCCCCCca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.