miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9642 5' -45.5 NC_002577.1 + 1170 0.69 0.999493
Target:  5'- -aUGGAAucuacggggGGggGGGGGGUu -3'
miRNA:   3'- uaGCCUUuaaauaaa-UCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 1628 0.75 0.966519
Target:  5'- cUCGGggGgggggggggGGGAGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 2705 0.76 0.945615
Target:  5'- uUCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 3890 0.69 0.999406
Target:  5'- -aCaGAGGUUccUAUgUGGggGGGGGGg -3'
miRNA:   3'- uaGcCUUUAA--AUAaAUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6066 0.66 0.999982
Target:  5'- --aGGGAGgaagaa-GGGAGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6092 0.7 0.998503
Target:  5'- --aGGGAGgaagaggGGAGGGGGGGg -3'
miRNA:   3'- uagCCUUUaaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6128 0.69 0.99966
Target:  5'- --gGGAGGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6154 0.69 0.99966
Target:  5'- --gGGAGGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6180 0.69 0.999157
Target:  5'- --gGGAAGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6216 0.72 0.993368
Target:  5'- --aGGGAGUggGg--AGggGGGGGGg -3'
miRNA:   3'- uagCCUUUAaaUaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6244 0.69 0.999082
Target:  5'- -aCGGAGGUggg---AGAAGGGGGa- -3'
miRNA:   3'- uaGCCUUUAaauaaaUCUUCCCCCca -5'
9642 5' -45.5 NC_002577.1 + 6283 0.71 0.997274
Target:  5'- -aCGGAGGggggagaaGGGAGGGGGGa -3'
miRNA:   3'- uaGCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6322 0.71 0.997274
Target:  5'- -aCGGAGGggggagaaGGGAGGGGGGa -3'
miRNA:   3'- uaGCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6660 0.7 0.997965
Target:  5'- aGUCGaGAGGcgUGg--GGggGGGGGGa -3'
miRNA:   3'- -UAGC-CUUUaaAUaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 7195 0.67 0.999922
Target:  5'- --aGGAAAauggUcgUgagGGGAGGGGGGg -3'
miRNA:   3'- uagCCUUUaa--AuaAa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 7239 1.07 0.036845
Target:  5'- gAUCGGAAAUUUAUUUAGAAGGGGGGUg -3'
miRNA:   3'- -UAGCCUUUAAAUAAAUCUUCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 7335 0.69 0.999192
Target:  5'- -aUGGggGggggaggGGggGGGGGGg -3'
miRNA:   3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 7436 0.67 0.999897
Target:  5'- -gCGGggGgggggUUAggccUUGGAAGGGGGa- -3'
miRNA:   3'- uaGCCuuUa----AAUa---AAUCUUCCCCCca -5'
9642 5' -45.5 NC_002577.1 + 7579 0.7 0.998317
Target:  5'- -gCGGggGggg----GGggGGGGGGg -3'
miRNA:   3'- uaGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 8494 0.72 0.994314
Target:  5'- -gCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- uaGCCuuUaaauaaaUCuuCCCCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.