miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9642 5' -45.5 NC_002577.1 + 126374 1.07 0.036845
Target:  5'- gAUCGGAAAUUUAUUUAGAAGGGGGGUg -3'
miRNA:   3'- -UAGCCUUUAAAUAAAUCUUCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 7239 1.07 0.036845
Target:  5'- gAUCGGAAAUUUAUUUAGAAGGGGGGUg -3'
miRNA:   3'- -UAGCCUUUAAAUAAAUCUUCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 162771 0.77 0.911865
Target:  5'- aAUCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- -UAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 134556 0.77 0.911865
Target:  5'- aAUCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- -UAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 154850 0.77 0.923054
Target:  5'- uAUCGGggGgggggg-GGggGGGGGGg -3'
miRNA:   3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 143955 0.76 0.940692
Target:  5'- aAUCGGggGggggg--GGggGGGGGGa -3'
miRNA:   3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 2705 0.76 0.945615
Target:  5'- uUCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 142486 0.76 0.945615
Target:  5'- uAUCGGggGgggg---GGggGGGGGGg -3'
miRNA:   3'- -UAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 130908 0.76 0.945615
Target:  5'- uUCGGggGg------GGggGGGGGGUg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 143538 0.75 0.957943
Target:  5'- cGUCGGGGcuggg---GGAGGGGGGGUa -3'
miRNA:   3'- -UAGCCUUuaaauaaaUCUUCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 156799 0.75 0.958743
Target:  5'- -gCGGAGGUggcgUAgg-AGGAGGGGGGc -3'
miRNA:   3'- uaGCCUUUAa---AUaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 140539 0.75 0.958743
Target:  5'- -gCGGAGGUggcgUAgg-AGGAGGGGGGc -3'
miRNA:   3'- uaGCCUUUAa---AUaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 131986 0.75 0.966519
Target:  5'- cUCGGggGgggggggggGGGAGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 1628 0.75 0.966519
Target:  5'- cUCGGggGgggggggggGGGAGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 37171 0.74 0.978107
Target:  5'- -aCGGguGUgUGUaUAGggGGGGGGg -3'
miRNA:   3'- uaGCCuuUAaAUAaAUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 162968 0.74 0.980529
Target:  5'- cUCGGggGgg-----GGggGGGGGGg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 134359 0.74 0.980529
Target:  5'- cUCGGggGgg-----GGggGGGGGGg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 121857 0.73 0.988879
Target:  5'- gGUCGGAcggGAgaagaaggGGGAGGGGGGg -3'
miRNA:   3'- -UAGCCU---UUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 11756 0.73 0.988879
Target:  5'- gGUCGGAcggGAgaagaaggGGGAGGGGGGg -3'
miRNA:   3'- -UAGCCU---UUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6216 0.72 0.993368
Target:  5'- --aGGGAGUggGg--AGggGGGGGGg -3'
miRNA:   3'- uagCCUUUAaaUaaaUCuuCCCCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.