miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9652 5' -56.1 NC_002577.1 + 82473 0.67 0.882715
Target:  5'- gUCGGCAAcGCACUacaCGaauauuacUUGAAGGGGGCu -3'
miRNA:   3'- -GGCCGUU-CGUGA---GCa-------GGCUUCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 96628 0.69 0.81277
Target:  5'- cCCGGaaaAGGCGCcCGUCuucgguccucuCGGAGGGGGa -3'
miRNA:   3'- -GGCCg--UUCGUGaGCAG-----------GCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 102011 0.67 0.896032
Target:  5'- aCGGUAucaaAGuCGCUCGgggcCCGAGGGccgaagacguuaGGGCa -3'
miRNA:   3'- gGCCGU----UC-GUGAGCa---GGCUUCC------------UCCG- -5'
9652 5' -56.1 NC_002577.1 + 108903 0.7 0.749282
Target:  5'- cCCGGCcauAGUuuCUCG-CCGccAGGGGGCa -3'
miRNA:   3'- -GGCCGu--UCGu-GAGCaGGCu-UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 121569 0.73 0.59759
Target:  5'- gCGGCGGGCaucuuguaccgcgcGCUCGgcgcgCCGGAGcAGGCg -3'
miRNA:   3'- gGCCGUUCG--------------UGAGCa----GGCUUCcUCCG- -5'
9652 5' -56.1 NC_002577.1 + 121731 0.74 0.518744
Target:  5'- cCCGGCuccgcucucGCGCUccgcauccucucggCGUCCGGAGGGGcGCg -3'
miRNA:   3'- -GGCCGuu-------CGUGA--------------GCAGGCUUCCUC-CG- -5'
9652 5' -56.1 NC_002577.1 + 121788 0.67 0.882715
Target:  5'- gCGGuCGGGuCGCgaucgCGUCCGucGGAucGGCg -3'
miRNA:   3'- gGCC-GUUC-GUGa----GCAGGCuuCCU--CCG- -5'
9652 5' -56.1 NC_002577.1 + 121943 0.73 0.570644
Target:  5'- -gGGgAGGCGC-CGUCCGAggccgccggggAGGAGGUu -3'
miRNA:   3'- ggCCgUUCGUGaGCAGGCU-----------UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 125432 0.68 0.837767
Target:  5'- aCCGGUgcguccGGGCGCUCGgCCGGGcGAacGGCg -3'
miRNA:   3'- -GGCCG------UUCGUGAGCaGGCUUcCU--CCG- -5'
9652 5' -56.1 NC_002577.1 + 126003 0.66 0.923791
Target:  5'- gCGGCGGGaagGCUCcgaGUCCGAccggaaacggaaaaAGGcGGCa -3'
miRNA:   3'- gGCCGUUCg--UGAG---CAGGCU--------------UCCuCCG- -5'
9652 5' -56.1 NC_002577.1 + 128994 0.68 0.837767
Target:  5'- gCC-GCGGGUACgcgCG-CCGAguaugGGGGGGCg -3'
miRNA:   3'- -GGcCGUUCGUGa--GCaGGCU-----UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 129038 0.67 0.896032
Target:  5'- aCGGCcgacucuuggGAGCGugcaUCGUUCGggGGucGGCu -3'
miRNA:   3'- gGCCG----------UUCGUg---AGCAGGCuuCCu-CCG- -5'
9652 5' -56.1 NC_002577.1 + 130229 1.07 0.004538
Target:  5'- cCCGGCAAGCACUCGUCCGAAGGAGGa -3'
miRNA:   3'- -GGCCGUUCGUGAGCAGGCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 130279 0.66 0.919423
Target:  5'- cCCGGUAAaguccagacGCGCgcaguucccuccuUCGUCCGGuguucGAGGCg -3'
miRNA:   3'- -GGCCGUU---------CGUG-------------AGCAGGCUuc---CUCCG- -5'
9652 5' -56.1 NC_002577.1 + 130347 0.67 0.875022
Target:  5'- gCCGcGuCGAGCAC-CGUgCUGGAGGAaggagauGGCg -3'
miRNA:   3'- -GGC-C-GUUCGUGaGCA-GGCUUCCU-------CCG- -5'
9652 5' -56.1 NC_002577.1 + 130546 0.66 0.919978
Target:  5'- cUCGGCGuuGUucgUCGgCCGAGGGuAGGCg -3'
miRNA:   3'- -GGCCGUu-CGug-AGCaGGCUUCC-UCCG- -5'
9652 5' -56.1 NC_002577.1 + 130874 0.68 0.832891
Target:  5'- aCCGGcCGAGUucauuguugggcuauGCUCGguuUUCGggGGGGGg -3'
miRNA:   3'- -GGCC-GUUCG---------------UGAGC---AGGCuuCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 131945 0.66 0.914334
Target:  5'- gUGGCAGGUcgaAC-CGUgUGggGGGGGg -3'
miRNA:   3'- gGCCGUUCG---UGaGCAgGCuuCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 134081 0.74 0.541068
Target:  5'- gCCGGCGGGCA--UGUCCGgcGGGGauGCa -3'
miRNA:   3'- -GGCCGUUCGUgaGCAGGCuuCCUC--CG- -5'
9652 5' -56.1 NC_002577.1 + 134684 0.72 0.640815
Target:  5'- uCCGGUGcGGCcC-CGUCCGAcuuugccguGGGAGGCu -3'
miRNA:   3'- -GGCCGU-UCGuGaGCAGGCU---------UCCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.