miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9652 5' -56.1 NC_002577.1 + 1669 0.66 0.914334
Target:  5'- gUGGCAGGUcgaAC-CGUgUGggGGGGGg -3'
miRNA:   3'- gGCCGUUCG---UGaGCAgGCuuCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 2739 0.68 0.832891
Target:  5'- aCCGGcCGAGUucauuguugggcuauGCUCGguuUUCGggGGGGGg -3'
miRNA:   3'- -GGCC-GUUCG---------------UGAGC---AGGCuuCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 3068 0.66 0.919978
Target:  5'- cUCGGCGuuGUucgUCGgCCGAGGGuAGGCg -3'
miRNA:   3'- -GGCCGUu-CGug-AGCaGGCUUCC-UCCG- -5'
9652 5' -56.1 NC_002577.1 + 3267 0.67 0.875022
Target:  5'- gCCGcGuCGAGCAC-CGUgCUGGAGGAaggagauGGCg -3'
miRNA:   3'- -GGC-C-GUUCGUGaGCA-GGCUUCCU-------CCG- -5'
9652 5' -56.1 NC_002577.1 + 3335 0.66 0.919423
Target:  5'- cCCGGUAAaguccagacGCGCgcaguucccuccuUCGUCCGGuguucGAGGCg -3'
miRNA:   3'- -GGCCGUU---------CGUG-------------AGCAGGCUuc---CUCCG- -5'
9652 5' -56.1 NC_002577.1 + 3385 1.07 0.004538
Target:  5'- cCCGGCAAGCACUCGUCCGAAGGAGGa -3'
miRNA:   3'- -GGCCGUUCGUGAGCAGGCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 4576 0.67 0.896032
Target:  5'- aCGGCcgacucuuggGAGCGugcaUCGUUCGggGGucGGCu -3'
miRNA:   3'- gGCCG----------UUCGUg---AGCAGGCuuCCu-CCG- -5'
9652 5' -56.1 NC_002577.1 + 4619 0.69 0.804111
Target:  5'- gCC-GCGGGUACgcgCG-CCGAguauGGGGGGCg -3'
miRNA:   3'- -GGcCGUUCGUGa--GCaGGCU----UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 7611 0.66 0.923791
Target:  5'- gCGGCGGGaagGCUCcgaGUCCGAccggaaacggaaaaAGGcGGCa -3'
miRNA:   3'- gGCCGUUCg--UGAG---CAGGCU--------------UCCuCCG- -5'
9652 5' -56.1 NC_002577.1 + 8181 0.68 0.837767
Target:  5'- aCCGGUgcguccGGGCGCUCGgCCGGGcGAacGGCg -3'
miRNA:   3'- -GGCCG------UUCGUGAGCaGGCUUcCU--CCG- -5'
9652 5' -56.1 NC_002577.1 + 11670 0.73 0.570644
Target:  5'- -gGGgAGGCGC-CGUCCGAggccgccggggAGGAGGUu -3'
miRNA:   3'- ggCCgUUCGUGaGCAGGCU-----------UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 11825 0.67 0.882715
Target:  5'- gCGGuCGGGuCGCgaucgCGUCCGucGGAucGGCg -3'
miRNA:   3'- gGCC-GUUC-GUGa----GCAGGCuuCCU--CCG- -5'
9652 5' -56.1 NC_002577.1 + 11883 0.74 0.525501
Target:  5'- cCCGGCuccgcucucGCGCUccgcaucccucucggCGUCCGGAGGGGcGCg -3'
miRNA:   3'- -GGCCGuu-------CGUGA---------------GCAGGCUUCCUC-CG- -5'
9652 5' -56.1 NC_002577.1 + 16368 0.7 0.777261
Target:  5'- -gGGCGcccGGC-CUUGUCCGGAGGguccAGGUu -3'
miRNA:   3'- ggCCGU---UCGuGAGCAGGCUUCC----UCCG- -5'
9652 5' -56.1 NC_002577.1 + 39640 0.68 0.829606
Target:  5'- gCCGGUAAGCGCaaaaCGgCCGgcGGAGa- -3'
miRNA:   3'- -GGCCGUUCGUGa---GCaGGCuuCCUCcg -5'
9652 5' -56.1 NC_002577.1 + 40530 0.69 0.822112
Target:  5'- -aGGCGAGCACgaguuucuuauacgGUCUGAAGGGaucGGCc -3'
miRNA:   3'- ggCCGUUCGUGag------------CAGGCUUCCU---CCG- -5'
9652 5' -56.1 NC_002577.1 + 46930 0.67 0.896032
Target:  5'- uUGGCGGaCAgUCGgucgCCGGAGGAcagcGGCa -3'
miRNA:   3'- gGCCGUUcGUgAGCa---GGCUUCCU----CCG- -5'
9652 5' -56.1 NC_002577.1 + 59819 0.68 0.845747
Target:  5'- gCGGCGAGaGCUCcguaaugcgCCGAAGGAaaaacuGGCg -3'
miRNA:   3'- gGCCGUUCgUGAGca-------GGCUUCCU------CCG- -5'
9652 5' -56.1 NC_002577.1 + 70449 0.81 0.240738
Target:  5'- aCGGCAAGCACgUUGUCCGAcguGGGAGa- -3'
miRNA:   3'- gGCCGUUCGUG-AGCAGGCU---UCCUCcg -5'
9652 5' -56.1 NC_002577.1 + 73956 0.67 0.875732
Target:  5'- uCCGG-GAGCAUccgCGUCgGAAGGAuGGg -3'
miRNA:   3'- -GGCCgUUCGUGa--GCAGgCUUCCU-CCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.