miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9652 5' -56.1 NC_002577.1 + 130229 1.07 0.004538
Target:  5'- cCCGGCAAGCACUCGUCCGAAGGAGGa -3'
miRNA:   3'- -GGCCGUUCGUGAGCAGGCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 3385 1.07 0.004538
Target:  5'- cCCGGCAAGCACUCGUCCGAAGGAGGa -3'
miRNA:   3'- -GGCCGUUCGUGAGCAGGCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 70449 0.81 0.240738
Target:  5'- aCGGCAAGCACgUUGUCCGAcguGGGAGa- -3'
miRNA:   3'- gGCCGUUCGUG-AGCAGGCU---UCCUCcg -5'
9652 5' -56.1 NC_002577.1 + 157071 0.78 0.317797
Target:  5'- aCGGCGGGCugggACUCGgucgcUCCGGAGGGGaGCg -3'
miRNA:   3'- gGCCGUUCG----UGAGC-----AGGCUUCCUC-CG- -5'
9652 5' -56.1 NC_002577.1 + 140267 0.78 0.317797
Target:  5'- aCGGCGGGCugggACUCGgucgcUCCGGAGGGGaGCg -3'
miRNA:   3'- gGCCGUUCG----UGAGC-----AGGCUUCCUC-CG- -5'
9652 5' -56.1 NC_002577.1 + 142082 0.78 0.332312
Target:  5'- cCCgGGCGAGCACUCucCCGAGGGcGGUa -3'
miRNA:   3'- -GG-CCGUUCGUGAGcaGGCUUCCuCCG- -5'
9652 5' -56.1 NC_002577.1 + 155256 0.78 0.332312
Target:  5'- cCCgGGCGAGCACUCucCCGAGGGcGGUa -3'
miRNA:   3'- -GG-CCGUUCGUGAGcaGGCUUCCuCCG- -5'
9652 5' -56.1 NC_002577.1 + 121731 0.74 0.518744
Target:  5'- cCCGGCuccgcucucGCGCUccgcauccucucggCGUCCGGAGGGGcGCg -3'
miRNA:   3'- -GGCCGuu-------CGUGA--------------GCAGGCUUCCUC-CG- -5'
9652 5' -56.1 NC_002577.1 + 11883 0.74 0.525501
Target:  5'- cCCGGCuccgcucucGCGCUccgcaucccucucggCGUCCGGAGGGGcGCg -3'
miRNA:   3'- -GGCCGuu-------CGUGA---------------GCAGGCUUCCUC-CG- -5'
9652 5' -56.1 NC_002577.1 + 134081 0.74 0.541068
Target:  5'- gCCGGCGGGCA--UGUCCGgcGGGGauGCa -3'
miRNA:   3'- -GGCCGUUCGUgaGCAGGCuuCCUC--CG- -5'
9652 5' -56.1 NC_002577.1 + 163247 0.74 0.541068
Target:  5'- gCCGGCGGGCA--UGUCCGgcGGGGauGCa -3'
miRNA:   3'- -GGCCGUUCGUgaGCAGGCuuCCUC--CG- -5'
9652 5' -56.1 NC_002577.1 + 121943 0.73 0.570644
Target:  5'- -gGGgAGGCGC-CGUCCGAggccgccggggAGGAGGUu -3'
miRNA:   3'- ggCCgUUCGUGaGCAGGCU-----------UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 11670 0.73 0.570644
Target:  5'- -gGGgAGGCGC-CGUCCGAggccgccggggAGGAGGUu -3'
miRNA:   3'- ggCCgUUCGUGaGCAGGCU-----------UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 121569 0.73 0.59759
Target:  5'- gCGGCGGGCaucuuguaccgcgcGCUCGgcgcgCCGGAGcAGGCg -3'
miRNA:   3'- gGCCGUUCG--------------UGAGCa----GGCUUCcUCCG- -5'
9652 5' -56.1 NC_002577.1 + 162644 0.72 0.640815
Target:  5'- uCCGGUGcGGCcC-CGUCCGAcuuugccguGGGAGGCu -3'
miRNA:   3'- -GGCCGU-UCGuGaGCAGGCU---------UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 134684 0.72 0.640815
Target:  5'- uCCGGUGcGGCcC-CGUCCGAcuuugccguGGGAGGCu -3'
miRNA:   3'- -GGCCGU-UCGuGaGCAGGCU---------UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 158854 0.71 0.680923
Target:  5'- cCCGaGCGaagGGUACgaggCCGggGGAGGCc -3'
miRNA:   3'- -GGC-CGU---UCGUGagcaGGCuuCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 138484 0.71 0.680923
Target:  5'- cCCGaGCGaagGGUACgaggCCGggGGAGGCc -3'
miRNA:   3'- -GGC-CGU---UCGUGagcaGGCuuCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 157201 0.7 0.730117
Target:  5'- gCUGGCGGGCcaccaacucgaGCUCuUCuCGAGGGGGGg -3'
miRNA:   3'- -GGCCGUUCG-----------UGAGcAG-GCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 140137 0.7 0.730117
Target:  5'- gCUGGCGGGCcaccaacucgaGCUCuUCuCGAGGGGGGg -3'
miRNA:   3'- -GGCCGUUCG-----------UGAGcAG-GCUUCCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.