Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9652 | 5' | -56.1 | NC_002577.1 | + | 3385 | 1.07 | 0.004538 |
Target: 5'- cCCGGCAAGCACUCGUCCGAAGGAGGa -3' miRNA: 3'- -GGCCGUUCGUGAGCAGGCUUCCUCCg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 135636 | 0.68 | 0.861139 |
Target: 5'- gCGGCcucuGGCGCcCGgccacaagggCCG-AGGAGGCu -3' miRNA: 3'- gGCCGu---UCGUGaGCa---------GGCuUCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 140733 | 0.68 | 0.868538 |
Target: 5'- -gGGgGGGCACgc--CCGAGGGAGGg -3' miRNA: 3'- ggCCgUUCGUGagcaGGCUUCCUCCg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 162531 | 0.66 | 0.932581 |
Target: 5'- gCCGcGCAGGCcUUCGgaaaggacgcggcgaUCUGAguccAGGGGGCc -3' miRNA: 3'- -GGC-CGUUCGuGAGC---------------AGGCU----UCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 121731 | 0.74 | 0.518744 |
Target: 5'- cCCGGCuccgcucucGCGCUccgcauccucucggCGUCCGGAGGGGcGCg -3' miRNA: 3'- -GGCCGuu-------CGUGA--------------GCAGGCUUCCUC-CG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 134081 | 0.74 | 0.541068 |
Target: 5'- gCCGGCGGGCA--UGUCCGgcGGGGauGCa -3' miRNA: 3'- -GGCCGUUCGUgaGCAGGCuuCCUC--CG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 121569 | 0.73 | 0.59759 |
Target: 5'- gCGGCGGGCaucuuguaccgcgcGCUCGgcgcgCCGGAGcAGGCg -3' miRNA: 3'- gGCCGUUCG--------------UGAGCa----GGCUUCcUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 134684 | 0.72 | 0.640815 |
Target: 5'- uCCGGUGcGGCcC-CGUCCGAcuuugccguGGGAGGCu -3' miRNA: 3'- -GGCCGU-UCGuGaGCAGGCU---------UCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 136130 | 0.69 | 0.81277 |
Target: 5'- aCCGGCccgcccaggcGGCGCUC-UCCGGuAGGcagAGGCg -3' miRNA: 3'- -GGCCGu---------UCGUGAGcAGGCU-UCC---UCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 8181 | 0.68 | 0.837767 |
Target: 5'- aCCGGUgcguccGGGCGCUCGgCCGGGcGAacGGCg -3' miRNA: 3'- -GGCCG------UUCGUGAGCaGGCUUcCU--CCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 40530 | 0.69 | 0.822112 |
Target: 5'- -aGGCGAGCACgaguuucuuauacgGUCUGAAGGGaucGGCc -3' miRNA: 3'- ggCCGUUCGUGag------------CAGGCUUCCU---CCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 140137 | 0.7 | 0.730117 |
Target: 5'- gCUGGCGGGCcaccaacucgaGCUCuUCuCGAGGGGGGg -3' miRNA: 3'- -GGCCGUUCG-----------UGAGcAG-GCUUCCUCCg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 70449 | 0.81 | 0.240738 |
Target: 5'- aCGGCAAGCACgUUGUCCGAcguGGGAGa- -3' miRNA: 3'- gGCCGUUCGUG-AGCAGGCU---UCCUCcg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 130874 | 0.68 | 0.832891 |
Target: 5'- aCCGGcCGAGUucauuguugggcuauGCUCGguuUUCGggGGGGGg -3' miRNA: 3'- -GGCC-GUUCG---------------UGAGC---AGGCuuCCUCCg -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 140267 | 0.78 | 0.317797 |
Target: 5'- aCGGCGGGCugggACUCGgucgcUCCGGAGGGGaGCg -3' miRNA: 3'- gGCCGUUCG----UGAGC-----AGGCUUCCUC-CG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 138484 | 0.71 | 0.680923 |
Target: 5'- cCCGaGCGaagGGUACgaggCCGggGGAGGCc -3' miRNA: 3'- -GGC-CGU---UCGUGagcaGGCuuCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 128994 | 0.68 | 0.837767 |
Target: 5'- gCC-GCGGGUACgcgCG-CCGAguaugGGGGGGCg -3' miRNA: 3'- -GGcCGUUCGUGa--GCaGGCU-----UCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 136569 | 0.68 | 0.861139 |
Target: 5'- gCCGGCAuagccAGCAaUCGgaguUCCaauGGGGGGCu -3' miRNA: 3'- -GGCCGU-----UCGUgAGC----AGGcu-UCCUCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 155256 | 0.78 | 0.332312 |
Target: 5'- cCCgGGCGAGCACUCucCCGAGGGcGGUa -3' miRNA: 3'- -GG-CCGUUCGUGAGcaGGCUUCCuCCG- -5' |
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9652 | 5' | -56.1 | NC_002577.1 | + | 121943 | 0.73 | 0.570644 |
Target: 5'- -gGGgAGGCGC-CGUCCGAggccgccggggAGGAGGUu -3' miRNA: 3'- ggCCgUUCGUGaGCAGGCU-----------UCCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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