miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9656 3' -51.2 NC_002577.1 + 82086 0.66 0.992351
Target:  5'- cCGCCCGCCGUGAAAca--GCCCUGgCGg -3'
miRNA:   3'- -GCGGGUGGUGUUUUuaucUGGGAC-GU- -5'
9656 3' -51.2 NC_002577.1 + 133457 0.66 0.992351
Target:  5'- aGCCCcgACCGUGAAAugAGGCCCgGCGa -3'
miRNA:   3'- gCGGG--UGGUGUUUUuaUCUGGGaCGU- -5'
9656 3' -51.2 NC_002577.1 + 39104 0.66 0.992351
Target:  5'- uCGUCUACCACAAAGAagaaAGACCgaaaucGCAa -3'
miRNA:   3'- -GCGGGUGGUGUUUUUa---UCUGGga----CGU- -5'
9656 3' -51.2 NC_002577.1 + 143955 0.66 0.992351
Target:  5'- aGCUCGCCACcucGAUu--CCCUGCu -3'
miRNA:   3'- gCGGGUGGUGuuuUUAucuGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 156 0.66 0.992351
Target:  5'- aGCCCcgACCGUGAAAugAGGCCCgGCGa -3'
miRNA:   3'- gCGGG--UGGUGUUUUuaUCUGGGaCGU- -5'
9656 3' -51.2 NC_002577.1 + 156013 0.66 0.99047
Target:  5'- cCGuCCCGCCACGGucuaaaucCCCUGCc -3'
miRNA:   3'- -GC-GGGUGGUGUUuuuaucu-GGGACGu -5'
9656 3' -51.2 NC_002577.1 + 163100 0.66 0.989813
Target:  5'- aGgCCGCC-CGGAAAUgcguagcGGACCCgUGCGc -3'
miRNA:   3'- gCgGGUGGuGUUUUUA-------UCUGGG-ACGU- -5'
9656 3' -51.2 NC_002577.1 + 134228 0.66 0.989813
Target:  5'- aGgCCGCC-CGGAAAUgcguagcGGACCCgUGCGc -3'
miRNA:   3'- gCgGGUGGuGUUUUUA-------UCUGGG-ACGU- -5'
9656 3' -51.2 NC_002577.1 + 151089 0.66 0.989541
Target:  5'- --aCCACCGCGcuucuacauccucuAAAuaaagcAGACCCUGCAa -3'
miRNA:   3'- gcgGGUGGUGU--------------UUUua----UCUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 161692 0.66 0.986825
Target:  5'- gCGCCCgGCCACAA----GGGCCgaggaggCUGCGa -3'
miRNA:   3'- -GCGGG-UGGUGUUuuuaUCUGG-------GACGU- -5'
9656 3' -51.2 NC_002577.1 + 135646 0.66 0.986825
Target:  5'- gCGCCCgGCCACAA----GGGCCgaggaggCUGCGa -3'
miRNA:   3'- -GCGGG-UGGUGUUuuuaUCUGG-------GACGU- -5'
9656 3' -51.2 NC_002577.1 + 85730 0.67 0.985279
Target:  5'- gGCUCGCCuGCAGAAuucgcUGGA-CCUGCAc -3'
miRNA:   3'- gCGGGUGG-UGUUUUu----AUCUgGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 131215 0.67 0.985279
Target:  5'- gGCCCaACCAUcacccuAAAGgcccGACCCUGCc -3'
miRNA:   3'- gCGGG-UGGUGu-----UUUUau--CUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 2399 0.67 0.985279
Target:  5'- gGCCCaACCAUcacccuAAAGgcccGACCCUGCc -3'
miRNA:   3'- gCGGG-UGGUGu-----UUUUau--CUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 31911 0.67 0.983403
Target:  5'- aCGCCCAUCGCGAA-GUAGAaCCgGUu -3'
miRNA:   3'- -GCGGGUGGUGUUUuUAUCUgGGaCGu -5'
9656 3' -51.2 NC_002577.1 + 107990 0.67 0.981351
Target:  5'- aCGCCUACgGCGGAAcacGUAGAuucccagaaauuUCCUGCc -3'
miRNA:   3'- -GCGGGUGgUGUUUU---UAUCU------------GGGACGu -5'
9656 3' -51.2 NC_002577.1 + 130411 0.67 0.976685
Target:  5'- aGCgCAUCGCGugguguuaGAGGUGGAUCCUGUc -3'
miRNA:   3'- gCGgGUGGUGU--------UUUUAUCUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 3203 0.67 0.976685
Target:  5'- aGCgCAUCGCGugguguuaGAGGUGGAUCCUGUc -3'
miRNA:   3'- gCGgGUGGUGU--------UUUUAUCUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 154483 0.67 0.976685
Target:  5'- aCGCCUAgUAUggGAAaGGACUUUGCGg -3'
miRNA:   3'- -GCGGGUgGUGuuUUUaUCUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 14398 0.67 0.976685
Target:  5'- gGUCCcCCAUuGAAAUAGGCCCU-CGa -3'
miRNA:   3'- gCGGGuGGUGuUUUUAUCUGGGAcGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.