miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9656 3' -51.2 NC_002577.1 + 83833 0.7 0.912683
Target:  5'- aGUCCAUCGUAAAugcGUGGACCaCUGCAu -3'
miRNA:   3'- gCGGGUGGUGUUUu--UAUCUGG-GACGU- -5'
9656 3' -51.2 NC_002577.1 + 95964 0.68 0.974055
Target:  5'- uGCUgACCGCAAAucgu-GCCCUGUAu -3'
miRNA:   3'- gCGGgUGGUGUUUuuaucUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 61818 0.68 0.972377
Target:  5'- aCGCCCACCguuucaugcaaACGucauuacuuaagcacAGAAUAGAUCCcGCGa -3'
miRNA:   3'- -GCGGGUGG-----------UGU---------------UUUUAUCUGGGaCGU- -5'
9656 3' -51.2 NC_002577.1 + 7279 0.68 0.968159
Target:  5'- uCGUCCGCCACGGAAGcUGGaACCCc--- -3'
miRNA:   3'- -GCGGGUGGUGUUUUU-AUC-UGGGacgu -5'
9656 3' -51.2 NC_002577.1 + 26833 0.68 0.964879
Target:  5'- aGCCCAUCAUAGAGuucggAGGCCUauugaaaagagUGCGu -3'
miRNA:   3'- gCGGGUGGUGUUUUua---UCUGGG-----------ACGU- -5'
9656 3' -51.2 NC_002577.1 + 17218 0.68 0.96137
Target:  5'- cCGCgCCGCCACGcuuuUAGACCCa--- -3'
miRNA:   3'- -GCG-GGUGGUGUuuuuAUCUGGGacgu -5'
9656 3' -51.2 NC_002577.1 + 102358 0.68 0.96137
Target:  5'- aCGCCUACUACAug---AGACCCgaugaUGUAa -3'
miRNA:   3'- -GCGGGUGGUGUuuuuaUCUGGG-----ACGU- -5'
9656 3' -51.2 NC_002577.1 + 32744 0.69 0.959151
Target:  5'- aGgCCGCCGCAGAcgaccuggcgaauuaGGUAGACgCCUGaCGa -3'
miRNA:   3'- gCgGGUGGUGUUU---------------UUAUCUG-GGAC-GU- -5'
9656 3' -51.2 NC_002577.1 + 94643 0.7 0.924457
Target:  5'- aCGCCCAaaauuCUACA----UAGGCUCUGCAu -3'
miRNA:   3'- -GCGGGU-----GGUGUuuuuAUCUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 3203 0.67 0.976685
Target:  5'- aGCgCAUCGCGugguguuaGAGGUGGAUCCUGUc -3'
miRNA:   3'- gCGgGUGGUGU--------UUUUAUCUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 154483 0.67 0.976685
Target:  5'- aCGCCUAgUAUggGAAaGGACUUUGCGg -3'
miRNA:   3'- -GCGGGUgGUGuuUUUaUCUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 31911 0.67 0.983403
Target:  5'- aCGCCCAUCGCGAA-GUAGAaCCgGUu -3'
miRNA:   3'- -GCGGGUGGUGUUUuUAUCUgGGaCGu -5'
9656 3' -51.2 NC_002577.1 + 133457 0.66 0.992351
Target:  5'- aGCCCcgACCGUGAAAugAGGCCCgGCGa -3'
miRNA:   3'- gCGGG--UGGUGUUUUuaUCUGGGaCGU- -5'
9656 3' -51.2 NC_002577.1 + 39104 0.66 0.992351
Target:  5'- uCGUCUACCACAAAGAagaaAGACCgaaaucGCAa -3'
miRNA:   3'- -GCGGGUGGUGUUUUUa---UCUGGga----CGU- -5'
9656 3' -51.2 NC_002577.1 + 143955 0.66 0.992351
Target:  5'- aGCUCGCCACcucGAUu--CCCUGCu -3'
miRNA:   3'- gCGGGUGGUGuuuUUAucuGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 134228 0.66 0.989813
Target:  5'- aGgCCGCC-CGGAAAUgcguagcGGACCCgUGCGc -3'
miRNA:   3'- gCgGGUGGuGUUUUUA-------UCUGGG-ACGU- -5'
9656 3' -51.2 NC_002577.1 + 151089 0.66 0.989541
Target:  5'- --aCCACCGCGcuucuacauccucuAAAuaaagcAGACCCUGCAa -3'
miRNA:   3'- gcgGGUGGUGU--------------UUUua----UCUGGGACGU- -5'
9656 3' -51.2 NC_002577.1 + 161692 0.66 0.986825
Target:  5'- gCGCCCgGCCACAA----GGGCCgaggaggCUGCGa -3'
miRNA:   3'- -GCGGG-UGGUGUUuuuaUCUGG-------GACGU- -5'
9656 3' -51.2 NC_002577.1 + 131215 0.67 0.985279
Target:  5'- gGCCCaACCAUcacccuAAAGgcccGACCCUGCc -3'
miRNA:   3'- gCGGG-UGGUGu-----UUUUau--CUGGGACGu -5'
9656 3' -51.2 NC_002577.1 + 85730 0.67 0.985279
Target:  5'- gGCUCGCCuGCAGAAuucgcUGGA-CCUGCAc -3'
miRNA:   3'- gCGGGUGG-UGUUUUu----AUCUgGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.