miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9684 3' -59.3 NC_002577.1 + 162948 0.66 0.831433
Target:  5'- cCCCCCCCCCGauugagcGGUUCUAU--CCGu -3'
miRNA:   3'- -GGGGGGGGGCau-----CUAAGGUAccGGCu -5'
9684 3' -59.3 NC_002577.1 + 134380 0.66 0.831433
Target:  5'- cCCCCCCCCCGauugagcGGUUCUAU--CCGu -3'
miRNA:   3'- -GGGGGGGGGCau-----CUAAGGUAccGGCu -5'
9684 3' -59.3 NC_002577.1 + 123925 0.66 0.806584
Target:  5'- cCCCCCCCCCcaAGc--CCGUgcgGGaCCGAg -3'
miRNA:   3'- -GGGGGGGGGcaUCuaaGGUA---CC-GGCU- -5'
9684 3' -59.3 NC_002577.1 + 9688 0.66 0.806584
Target:  5'- cCCCCCCCCCcaAGc--CCGUgcgGGaCCGAg -3'
miRNA:   3'- -GGGGGGGGGcaUCuaaGGUA---CC-GGCU- -5'
9684 3' -59.3 NC_002577.1 + 11786 0.67 0.762341
Target:  5'- uUCCCCCgCCGcaucgcGUUCCGccgGGCCGGu -3'
miRNA:   3'- -GGGGGGgGGCauc---UAAGGUa--CCGGCU- -5'
9684 3' -59.3 NC_002577.1 + 108709 0.67 0.762341
Target:  5'- uUgCCCCCUGgcggcgAGAaaCUAUGGCCGGg -3'
miRNA:   3'- gGgGGGGGGCa-----UCUaaGGUACCGGCU- -5'
9684 3' -59.3 NC_002577.1 + 52945 0.67 0.762341
Target:  5'- uCCCCCgCUCUGU----UCC-UGGCCGAu -3'
miRNA:   3'- -GGGGG-GGGGCAucuaAGGuACCGGCU- -5'
9684 3' -59.3 NC_002577.1 + 121827 0.67 0.762341
Target:  5'- uUCCCCCgCCGcaucgcGUUCCGccgGGCCGGu -3'
miRNA:   3'- -GGGGGGgGGCauc---UAAGGUa--CCGGCU- -5'
9684 3' -59.3 NC_002577.1 + 138884 0.67 0.754064
Target:  5'- cCCCCUUCCCGUuccAGAcuggaacgggccgucUCCGaGGCCGGg -3'
miRNA:   3'- -GGGGGGGGGCA---UCUa--------------AGGUaCCGGCU- -5'
9684 3' -59.3 NC_002577.1 + 158454 0.67 0.754064
Target:  5'- cCCCCUUCCCGUuccAGAcuggaacgggccgucUCCGaGGCCGGg -3'
miRNA:   3'- -GGGGGGGGGCA---UCUa--------------AGGUaCCGGCU- -5'
9684 3' -59.3 NC_002577.1 + 42008 0.67 0.743838
Target:  5'- cCCUgUCUUCGUGGAUUaCCAUGGCUc- -3'
miRNA:   3'- -GGGgGGGGGCAUCUAA-GGUACCGGcu -5'
9684 3' -59.3 NC_002577.1 + 135195 0.67 0.734446
Target:  5'- cCCCCCCCCCGaccugacuUAGccUUCAcucGCCGAa -3'
miRNA:   3'- -GGGGGGGGGC--------AUCuaAGGUac-CGGCU- -5'
9684 3' -59.3 NC_002577.1 + 156998 0.68 0.724972
Target:  5'- uCCCCCCCUCGagaAGAgcucgagUUgGUGGCCc- -3'
miRNA:   3'- -GGGGGGGGGCa--UCUa------AGgUACCGGcu -5'
9684 3' -59.3 NC_002577.1 + 7610 0.68 0.700013
Target:  5'- cCCCCCCCCCGcgcuuucucguUUCCccgugGGCCa- -3'
miRNA:   3'- -GGGGGGGGGCaucu-------AAGGua---CCGGcu -5'
9684 3' -59.3 NC_002577.1 + 139193 0.68 0.696138
Target:  5'- gCUCCCUCCCGcgcuUUCCGcGGCCGu -3'
miRNA:   3'- -GGGGGGGGGCaucuAAGGUaCCGGCu -5'
9684 3' -59.3 NC_002577.1 + 158145 0.68 0.696138
Target:  5'- gCUCCCUCCCGcgcuUUCCGcGGCCGu -3'
miRNA:   3'- -GGGGGGGGGCaucuAAGGUaCCGGCu -5'
9684 3' -59.3 NC_002577.1 + 6475 0.68 0.686416
Target:  5'- cCCCCCCCCCacgccucucGAcucuuuuuuuuUUCCAUgGGCCGu -3'
miRNA:   3'- -GGGGGGGGGcau------CU-----------AAGGUA-CCGGCu -5'
9684 3' -59.3 NC_002577.1 + 127139 0.68 0.686416
Target:  5'- cCCCCCCCCCacgccucucGAcucuuuuuuuuUUCCAUgGGCCGu -3'
miRNA:   3'- -GGGGGGGGGcau------CU-----------AAGGUA-CCGGCu -5'
9684 3' -59.3 NC_002577.1 + 140339 0.68 0.686416
Target:  5'- uCCCCCCCUCGagaAGAgcucagUUgGUGGCCc- -3'
miRNA:   3'- -GGGGGGGGGCa--UCUa-----AGgUACCGGcu -5'
9684 3' -59.3 NC_002577.1 + 126003 0.69 0.64128
Target:  5'- cCCCCCCCCCGcgcuuucucguUUCCGccgugGGCCa- -3'
miRNA:   3'- -GGGGGGGGGCaucu-------AAGGUa----CCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.