miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9684 5' -49.7 NC_002577.1 + 106136 0.65 0.998927
Target:  5'- uGCCGGUgaugcgaugcgagUUagUGGAAga--GCGGGGu -3'
miRNA:   3'- gUGGCCG-------------AAaaACCUUaaagCGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 134080 0.66 0.998457
Target:  5'- gGCCGGCg----GGcAUgUCcgGCGGGGa -3'
miRNA:   3'- gUGGCCGaaaaaCCuUAaAG--CGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 163248 0.66 0.998457
Target:  5'- gGCCGGCg----GGcAUgUCcgGCGGGGa -3'
miRNA:   3'- gUGGCCGaaaaaCCuUAaAG--CGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 161899 0.66 0.997786
Target:  5'- gACUGGCUgggcgUGcGGA--UCGgGGGGg -3'
miRNA:   3'- gUGGCCGAaaa--AC-CUUaaAGCgCCCC- -5'
9684 5' -49.7 NC_002577.1 + 135439 0.66 0.997786
Target:  5'- gACUGGCUgggcgUGcGGA--UCGgGGGGg -3'
miRNA:   3'- gUGGCCGAaaa--AC-CUUaaAGCgCCCC- -5'
9684 5' -49.7 NC_002577.1 + 26479 0.67 0.997542
Target:  5'- uUACUGGCUg--UGGAAcgaaacUaagcgggaaacagauUUCGUGGGGu -3'
miRNA:   3'- -GUGGCCGAaaaACCUU------A---------------AAGCGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 4637 0.67 0.996885
Target:  5'- gGCCGcGCUgca-GGGAUggcCGCGGGu -3'
miRNA:   3'- gUGGC-CGAaaaaCCUUAaa-GCGCCCc -5'
9684 5' -49.7 NC_002577.1 + 128976 0.67 0.996885
Target:  5'- gGCCGcGCUgca-GGGAUggcCGCGGGu -3'
miRNA:   3'- gUGGC-CGAaaaaCCUUAaa-GCGCCCc -5'
9684 5' -49.7 NC_002577.1 + 39295 0.68 0.993257
Target:  5'- aACCGGU-----GGAGg--UGCGGGGg -3'
miRNA:   3'- gUGGCCGaaaaaCCUUaaaGCGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 6449 0.68 0.993257
Target:  5'- gGCCGGCUUg--GGAAaugUCaGCGGa- -3'
miRNA:   3'- gUGGCCGAAaaaCCUUaa-AG-CGCCcc -5'
9684 5' -49.7 NC_002577.1 + 127165 0.68 0.993257
Target:  5'- gGCCGGCUUg--GGAAaugUCaGCGGa- -3'
miRNA:   3'- gUGGCCGAAaaaCCUUaa-AG-CGCCcc -5'
9684 5' -49.7 NC_002577.1 + 126852 0.68 0.991086
Target:  5'- -uCgGGCgagugGGAAUgggcaUCGCGGGGu -3'
miRNA:   3'- guGgCCGaaaaaCCUUAa----AGCGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 6761 0.68 0.991086
Target:  5'- -uCgGGCgagugGGAAUgggcaUCGCGGGGu -3'
miRNA:   3'- guGgCCGaaaaaCCUUAa----AGCGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 14565 0.68 0.989812
Target:  5'- gACCGGCUcc--GGAugAUUguguuaGCGGGGa -3'
miRNA:   3'- gUGGCCGAaaaaCCU--UAAag----CGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 136909 0.69 0.986838
Target:  5'- gCACgGGCUcg--GGAGaacUUGCGGGGc -3'
miRNA:   3'- -GUGgCCGAaaaaCCUUaa-AGCGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 160428 0.69 0.986838
Target:  5'- gCACgGGCUcg--GGAGaacUUGCGGGGc -3'
miRNA:   3'- -GUGgCCGAaaaaCCUUaa-AGCGCCCC- -5'
9684 5' -49.7 NC_002577.1 + 135769 0.69 0.985121
Target:  5'- uCGCCGGCcgcg-GGGuUUUCGCGGcGa -3'
miRNA:   3'- -GUGGCCGaaaaaCCUuAAAGCGCC-Cc -5'
9684 5' -49.7 NC_002577.1 + 161568 0.69 0.985121
Target:  5'- uCGCCGGCcgcg-GGGuUUUCGCGGcGa -3'
miRNA:   3'- -GUGGCCGaaaaaCCUuAAAGCGCC-Cc -5'
9684 5' -49.7 NC_002577.1 + 145374 0.69 0.985121
Target:  5'- aACCGGCUacguagaaauUUgaugUGGAccguugUUCGCGGcGGa -3'
miRNA:   3'- gUGGCCGA----------AAa---ACCUua----AAGCGCC-CC- -5'
9684 5' -49.7 NC_002577.1 + 43495 0.7 0.976507
Target:  5'- uCAUCGGCUUc--GGggUUUauaaGgGGGGg -3'
miRNA:   3'- -GUGGCCGAAaaaCCuuAAAg---CgCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.