Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
975 | 3' | -50.5 | NC_000902.1 | + | 4067 | 0.7 | 0.766559 |
Target: 5'- gCCGCCAuACcgUAUUGCa-GCGGCACGa -3' miRNA: 3'- -GGUGGU-UGuuGUAAUGgcCGUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 20700 | 0.69 | 0.835105 |
Target: 5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3' miRNA: 3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 24470 | 0.68 | 0.892808 |
Target: 5'- gUCACCGGuCAguGCAUUugCGGCGGauaaACu -3' miRNA: 3'- -GGUGGUU-GU--UGUAAugGCCGUCg---UGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 24602 | 0.74 | 0.545593 |
Target: 5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3' miRNA: 3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 24692 | 0.67 | 0.906903 |
Target: 5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3' miRNA: 3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 25103 | 0.66 | 0.931665 |
Target: 5'- gCACCGGCAGCuccggaGCCGGaaGGCAUc -3' miRNA: 3'- gGUGGUUGUUGuaa---UGGCCg-UCGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 25612 | 0.66 | 0.942314 |
Target: 5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3' miRNA: 3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 28525 | 0.68 | 0.877608 |
Target: 5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3' miRNA: 3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 31813 | 0.67 | 0.925908 |
Target: 5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3' miRNA: 3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 31907 | 0.68 | 0.861349 |
Target: 5'- gCGCCuguuCAGCAgacACCGGCguuuaAGCACa -3' miRNA: 3'- gGUGGuu--GUUGUaa-UGGCCG-----UCGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 35071 | 0.66 | 0.937133 |
Target: 5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3' miRNA: 3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 35163 | 0.7 | 0.766559 |
Target: 5'- aCACCAcACAGCGUgACgGGgAGCugGu -3' miRNA: 3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 35319 | 0.68 | 0.859668 |
Target: 5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3' miRNA: 3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 35941 | 0.67 | 0.913526 |
Target: 5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3' miRNA: 3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 36913 | 0.79 | 0.323027 |
Target: 5'- gCCACCGGCAGCAUccuUACUGaaAGCGCGa -3' miRNA: 3'- -GGUGGUUGUUGUA---AUGGCcgUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 39226 | 0.66 | 0.946732 |
Target: 5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3' miRNA: 3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 39946 | 0.78 | 0.383281 |
Target: 5'- uCCGCCAguACAGCGgaaUGCUcgGGCAGCAUGg -3' miRNA: 3'- -GGUGGU--UGUUGUa--AUGG--CCGUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 40163 | 0.67 | 0.925908 |
Target: 5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3' miRNA: 3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 40656 | 0.68 | 0.877608 |
Target: 5'- uUACCGGCAAac---CCGGCGGCAa- -3' miRNA: 3'- gGUGGUUGUUguaauGGCCGUCGUgc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 40953 | 0.69 | 0.85284 |
Target: 5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3' miRNA: 3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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