Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
975 | 3' | -50.5 | NC_000902.1 | + | 47637 | 0.75 | 0.502355 |
Target: 5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3' miRNA: 3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 35071 | 0.66 | 0.937133 |
Target: 5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3' miRNA: 3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 25103 | 0.66 | 0.931665 |
Target: 5'- gCACCGGCAGCuccggaGCCGGaaGGCAUc -3' miRNA: 3'- gGUGGUUGUUGuaa---UGGCCg-UCGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 40163 | 0.67 | 0.925908 |
Target: 5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3' miRNA: 3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 48639 | 0.67 | 0.919861 |
Target: 5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3' miRNA: 3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 24470 | 0.68 | 0.892808 |
Target: 5'- gUCACCGGuCAguGCAUUugCGGCGGauaaACu -3' miRNA: 3'- -GGUGGUU-GU--UGUAAugGCCGUCg---UGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 49716 | 0.68 | 0.885344 |
Target: 5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3' miRNA: 3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 31907 | 0.68 | 0.861349 |
Target: 5'- gCGCCuguuCAGCAgacACCGGCguuuaAGCACa -3' miRNA: 3'- gGUGGuu--GUUGUaa-UGGCCG-----UCGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 45514 | 0.69 | 0.835105 |
Target: 5'- ---aCGACAAUAUUGCUGGCAcCACa -3' miRNA: 3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 24602 | 0.74 | 0.545593 |
Target: 5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3' miRNA: 3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 51582 | 0.71 | 0.734777 |
Target: 5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3' miRNA: 3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 35163 | 0.7 | 0.766559 |
Target: 5'- aCACCAcACAGCGUgACgGGgAGCugGu -3' miRNA: 3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 49361 | 0.7 | 0.787043 |
Target: 5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3' miRNA: 3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 46058 | 0.69 | 0.816477 |
Target: 5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3' miRNA: 3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 20700 | 0.69 | 0.835105 |
Target: 5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3' miRNA: 3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 55738 | 1.13 | 0.001955 |
Target: 5'- aCCACCAACAACAUUACCGGCAGCACGg -3' miRNA: 3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 25612 | 0.66 | 0.942314 |
Target: 5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3' miRNA: 3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 59721 | 0.66 | 0.941808 |
Target: 5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3' miRNA: 3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 50508 | 0.66 | 0.937133 |
Target: 5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3' miRNA: 3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 60457 | 0.67 | 0.925908 |
Target: 5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3' miRNA: 3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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