miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9762 3' -57.1 NC_002577.1 + 104894 0.71 0.628039
Target:  5'- uGGGCGCGUgcGCGGaC-GACGCCGCGg -3'
miRNA:   3'- uCUUGCGCGguUGCC-GaCUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 122013 0.67 0.837096
Target:  5'- cGGAACGCGau-GCGGCgggggaaaaGGCGCCGa- -3'
miRNA:   3'- -UCUUGCGCgguUGCCGa--------CUGCGGUgu -5'
9762 3' -57.1 NC_002577.1 + 122365 0.69 0.718523
Target:  5'- cGGccCGCGCCGGgGGCUagaaACGCCGCc -3'
miRNA:   3'- -UCuuGCGCGGUUgCCGAc---UGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 122635 0.66 0.853032
Target:  5'- gAGAACGuCGUCuACGGCUcGCGuUCGCGg -3'
miRNA:   3'- -UCUUGC-GCGGuUGCCGAcUGC-GGUGU- -5'
9762 3' -57.1 NC_002577.1 + 122939 0.7 0.648332
Target:  5'- -cGACGU-CCGACGGUuccgGACGCCGCGa -3'
miRNA:   3'- ucUUGCGcGGUUGCCGa---CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 124443 0.67 0.811839
Target:  5'- cGAugGCGCgGGCGGggGAgucCGUCGCGu -3'
miRNA:   3'- uCUugCGCGgUUGCCgaCU---GCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 125510 0.69 0.728329
Target:  5'- -aAACGCGCCGcuGCGcGCcuaaACGCCGCAg -3'
miRNA:   3'- ucUUGCGCGGU--UGC-CGac--UGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 129034 0.69 0.718522
Target:  5'- cGGAGCGUGUaacgauuuccgCGGCGcGCgacGACGCCGCGc -3'
miRNA:   3'- -UCUUGCGCG-----------GUUGC-CGa--CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 134100 0.66 0.853032
Target:  5'- gGGGAUGCaGCguGCGGCUcGGCcuacugGCCGCGc -3'
miRNA:   3'- -UCUUGCG-CGguUGCCGA-CUG------CGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 134885 0.7 0.668575
Target:  5'- cGAACGCGCCcGCgGGCUcgccGGCGCUucuGCGc -3'
miRNA:   3'- uCUUGCGCGGuUG-CCGA----CUGCGG---UGU- -5'
9762 3' -57.1 NC_002577.1 + 135184 0.68 0.788774
Target:  5'- cGGAUGCGUCAccgccugguccauugGuCGGCcGugGCCACGc -3'
miRNA:   3'- uCUUGCGCGGU---------------U-GCCGaCugCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 136469 1.09 0.002481
Target:  5'- gAGAACGCGCCAACGGCUGACGCCACAg -3'
miRNA:   3'- -UCUUGCGCGGUUGCCGACUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 136803 0.66 0.86818
Target:  5'- ----gGCGaUCGACGGCaucgUGGCGCCGCc -3'
miRNA:   3'- ucuugCGC-GGUUGCCG----ACUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 136957 0.66 0.867442
Target:  5'- cGGAGCGCGaCCGGCccucggacguuccGGaaGAgGCCGCGu -3'
miRNA:   3'- -UCUUGCGC-GGUUG-------------CCgaCUgCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 137211 0.69 0.708643
Target:  5'- gAGAAgGC-CCGACGGCUGcaacGCGUgGCGc -3'
miRNA:   3'- -UCUUgCGcGGUUGCCGAC----UGCGgUGU- -5'
9762 3' -57.1 NC_002577.1 + 137384 0.66 0.881799
Target:  5'- cGGGgGCGCCAggagcgaacucucGCGGCUaAUGCgGCGg -3'
miRNA:   3'- uCUUgCGCGGU-------------UGCCGAcUGCGgUGU- -5'
9762 3' -57.1 NC_002577.1 + 138468 0.69 0.6987
Target:  5'- gAGGACgGCGCgGccGCGGCcggcgGGCGCCAUc -3'
miRNA:   3'- -UCUUG-CGCGgU--UGCCGa----CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 138746 0.67 0.828851
Target:  5'- ---uCGCGCCgGACGGCUGACGg---- -3'
miRNA:   3'- ucuuGCGCGG-UUGCCGACUGCggugu -5'
9762 3' -57.1 NC_002577.1 + 138976 0.66 0.853031
Target:  5'- -uGGCGCGCCGccgucaccgccGCGGCgcuACGCCGa- -3'
miRNA:   3'- ucUUGCGCGGU-----------UGCCGac-UGCGGUgu -5'
9762 3' -57.1 NC_002577.1 + 139344 0.71 0.628039
Target:  5'- gGGAGuaccCGCGcCCGGCGGC-GGCGCgCACGc -3'
miRNA:   3'- -UCUU----GCGC-GGUUGCCGaCUGCG-GUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.