miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9762 3' -57.1 NC_002577.1 + 4580 0.69 0.718523
Target:  5'- cGGAGCGUGUaacgauuuccgCGGCGcGCgacGACGCCGCGc -3'
miRNA:   3'- -UCUUGCGCG-----------GUUGC-CGa--CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 8103 0.69 0.728329
Target:  5'- -aAACGCGCCGcuGCGcGCcuaaACGCCGCAg -3'
miRNA:   3'- ucUUGCGCGGU--UGC-CGac--UGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 9171 0.67 0.811839
Target:  5'- cGAugGCGCgGGCGGggGAgucCGUCGCGu -3'
miRNA:   3'- uCUugCGCGgUUGCCgaCU---GCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 10675 0.7 0.648333
Target:  5'- -cGACGU-CCGACGGUuccgGACGCCGCGa -3'
miRNA:   3'- ucUUGCGcGGUUGCCGa---CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 10979 0.66 0.853031
Target:  5'- gAGAACGuCGUCuACGGCUcGCGuUCGCGg -3'
miRNA:   3'- -UCUUGC-GCGGuUGCCGAcUGC-GGUGU- -5'
9762 3' -57.1 NC_002577.1 + 11249 0.69 0.718522
Target:  5'- cGGccCGCGCCGGgGGCUagaaACGCCGCc -3'
miRNA:   3'- -UCuuGCGCGGUUgCCGAc---UGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 11601 0.67 0.837097
Target:  5'- cGGAACGCGau-GCGGCgggggaaaaGGCGCCGa- -3'
miRNA:   3'- -UCUUGCGCgguUGCCGa--------CUGCGGUgu -5'
9762 3' -57.1 NC_002577.1 + 19825 0.68 0.775957
Target:  5'- gAGAGCgGCGCgGcAUGGUauucGGCGCCGCAc -3'
miRNA:   3'- -UCUUG-CGCGgU-UGCCGa---CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 24262 0.7 0.658464
Target:  5'- cAGAACGgGC--GCGaGCUGACGCCuCGu -3'
miRNA:   3'- -UCUUGCgCGguUGC-CGACUGCGGuGU- -5'
9762 3' -57.1 NC_002577.1 + 31311 0.69 0.6987
Target:  5'- uGAugGCGCCuACGGCgauauaacacgUGAUGCaUACAa -3'
miRNA:   3'- uCUugCGCGGuUGCCG-----------ACUGCG-GUGU- -5'
9762 3' -57.1 NC_002577.1 + 45198 0.66 0.853032
Target:  5'- -aAACcCGCCAggagGCGGCgaucGACGCCAUc -3'
miRNA:   3'- ucUUGcGCGGU----UGCCGa---CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 47158 0.66 0.889326
Target:  5'- cGGACGCGgcCCGuugacgaccAUGGCcgGAUGCCGCu -3'
miRNA:   3'- uCUUGCGC--GGU---------UGCCGa-CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 54818 0.72 0.567465
Target:  5'- uGGAACGagcuGCUucuGCGGCUgaacuugccGACGCCGCAg -3'
miRNA:   3'- -UCUUGCg---CGGu--UGCCGA---------CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 55539 0.68 0.793287
Target:  5'- cAGAGCGUucguaacgacgaaGUCAAC-GCUGcCGCCGCAg -3'
miRNA:   3'- -UCUUGCG-------------CGGUUGcCGACuGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 62488 0.67 0.803088
Target:  5'- --uGCGCGuCCAggACGGCgGuuGCCGCAu -3'
miRNA:   3'- ucuUGCGC-GGU--UGCCGaCugCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 64122 0.67 0.837096
Target:  5'- aGGGAUGCGagGGCGGUUGGagugucgaugcUGCCGCGa -3'
miRNA:   3'- -UCUUGCGCggUUGCCGACU-----------GCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 78862 0.67 0.821279
Target:  5'- aGGGGCGCGUCGGaGGCgucuaaauauguaugGAUGCCugGg -3'
miRNA:   3'- -UCUUGCGCGGUUgCCGa--------------CUGCGGugU- -5'
9762 3' -57.1 NC_002577.1 + 81273 0.66 0.853032
Target:  5'- cGAG-GCGCgCAGCGGC-GACuGCUGCAg -3'
miRNA:   3'- uCUUgCGCG-GUUGCCGaCUG-CGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 91547 0.67 0.837096
Target:  5'- gAGAAUaaagGgGCUAcCGGUgGACGCCGCAc -3'
miRNA:   3'- -UCUUG----CgCGGUuGCCGaCUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 91577 0.71 0.607758
Target:  5'- -aGACGCGCCGuGCGGCUG--GCUACGg -3'
miRNA:   3'- ucUUGCGCGGU-UGCCGACugCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.