miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9762 3' -57.1 NC_002577.1 + 136469 1.09 0.002481
Target:  5'- gAGAACGCGCCAACGGCUGACGCCACAg -3'
miRNA:   3'- -UCUUGCGCGGUUGCCGACUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 160869 1.09 0.002481
Target:  5'- gAGAACGCGCCAACGGCUGACGCCACAg -3'
miRNA:   3'- -UCUUGCGCGGUUGCCGACUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 54818 0.72 0.567465
Target:  5'- uGGAACGagcuGCUucuGCGGCUgaacuugccGACGCCGCAg -3'
miRNA:   3'- -UCUUGCg---CGGu--UGCCGA---------CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 91577 0.71 0.607758
Target:  5'- -aGACGCGCCGuGCGGCUG--GCUACGg -3'
miRNA:   3'- ucUUGCGCGGU-UGCCGACugCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 139344 0.71 0.628039
Target:  5'- gGGAGuaccCGCGcCCGGCGGC-GGCGCgCACGc -3'
miRNA:   3'- -UCUU----GCGC-GGUUGCCGaCUGCG-GUGU- -5'
9762 3' -57.1 NC_002577.1 + 157994 0.71 0.628039
Target:  5'- gGGAGuaccCGCGcCCGGCGGC-GGCGCgCACGc -3'
miRNA:   3'- -UCUU----GCGC-GGUUGCCGaCUGCG-GUGU- -5'
9762 3' -57.1 NC_002577.1 + 104894 0.71 0.628039
Target:  5'- uGGGCGCGUgcGCGGaC-GACGCCGCGg -3'
miRNA:   3'- uCUUGCGCGguUGCC-GaCUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 122939 0.7 0.648332
Target:  5'- -cGACGU-CCGACGGUuccgGACGCCGCGa -3'
miRNA:   3'- ucUUGCGcGGUUGCCGa---CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 10675 0.7 0.648333
Target:  5'- -cGACGU-CCGACGGUuccgGACGCCGCGa -3'
miRNA:   3'- ucUUGCGcGGUUGCCGa---CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 24262 0.7 0.658464
Target:  5'- cAGAACGgGC--GCGaGCUGACGCCuCGu -3'
miRNA:   3'- -UCUUGCgCGguUGC-CGACUGCGGuGU- -5'
9762 3' -57.1 NC_002577.1 + 162442 0.7 0.668575
Target:  5'- cGAACGCGCCcGCgGGCUcgccGGCGCUucuGCGc -3'
miRNA:   3'- uCUUGCGCGGuUG-CCGA----CUGCGG---UGU- -5'
9762 3' -57.1 NC_002577.1 + 134885 0.7 0.668575
Target:  5'- cGAACGCGCCcGCgGGCUcgccGGCGCUucuGCGc -3'
miRNA:   3'- uCUUGCGCGGuUG-CCGA----CUGCGG---UGU- -5'
9762 3' -57.1 NC_002577.1 + 158869 0.69 0.6987
Target:  5'- gAGGACgGCGCgGccGCGGCcggcgGGCGCCAUc -3'
miRNA:   3'- -UCUUG-CGCGgU--UGCCGa----CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 31311 0.69 0.6987
Target:  5'- uGAugGCGCCuACGGCgauauaacacgUGAUGCaUACAa -3'
miRNA:   3'- uCUugCGCGGuUGCCG-----------ACUGCG-GUGU- -5'
9762 3' -57.1 NC_002577.1 + 138468 0.69 0.6987
Target:  5'- gAGGACgGCGCgGccGCGGCcggcgGGCGCCAUc -3'
miRNA:   3'- -UCUUG-CGCGgU--UGCCGa----CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 160127 0.69 0.708643
Target:  5'- gAGAAgGC-CCGACGGCUGcaacGCGUgGCGc -3'
miRNA:   3'- -UCUUgCGcGGUUGCCGAC----UGCGgUGU- -5'
9762 3' -57.1 NC_002577.1 + 137211 0.69 0.708643
Target:  5'- gAGAAgGC-CCGACGGCUGcaacGCGUgGCGc -3'
miRNA:   3'- -UCUUgCGcGGUUGCCGAC----UGCGgUGU- -5'
9762 3' -57.1 NC_002577.1 + 11249 0.69 0.718522
Target:  5'- cGGccCGCGCCGGgGGCUagaaACGCCGCc -3'
miRNA:   3'- -UCuuGCGCGGUUgCCGAc---UGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 156009 0.69 0.718522
Target:  5'- gGGAaacGCGCGCCGGuccaaccgUGGC-GACGCCgGCAg -3'
miRNA:   3'- -UCU---UGCGCGGUU--------GCCGaCUGCGG-UGU- -5'
9762 3' -57.1 NC_002577.1 + 129034 0.69 0.718522
Target:  5'- cGGAGCGUGUaacgauuuccgCGGCGcGCgacGACGCCGCGc -3'
miRNA:   3'- -UCUUGCGCG-----------GUUGC-CGa--CUGCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.