miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9763 5' -57.7 NC_002577.1 + 133934 0.67 0.794653
Target:  5'- ---cCAGGGuCCGCCGCGcgcauGCuCGCu -3'
miRNA:   3'- aauaGUCCC-GGCGGCGUaau--CG-GCGc -5'
9763 5' -57.7 NC_002577.1 + 135866 0.76 0.293102
Target:  5'- -gAUCGGGGUgGCCaggccaucggacggaGCAUUGGCUGCGg -3'
miRNA:   3'- aaUAGUCCCGgCGG---------------CGUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 136262 0.67 0.747813
Target:  5'- ---aCAGGuGCuCGCCuGgGUUGGCCGUGu -3'
miRNA:   3'- aauaGUCC-CG-GCGG-CgUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 137172 1.07 0.002567
Target:  5'- gUUAUCAGGGCCGCCGCAUUAGCCGCGa -3'
miRNA:   3'- -AAUAGUCCCGGCGGCGUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 138492 0.72 0.506785
Target:  5'- ---cCAGaGGCCGCgGCcgcGGCCGCGg -3'
miRNA:   3'- aauaGUC-CCGGCGgCGuaaUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 138979 0.66 0.83784
Target:  5'- -gAUUGGcGcGCCGCCGUcaccGCCGCGg -3'
miRNA:   3'- aaUAGUC-C-CGGCGGCGuaauCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 139082 0.67 0.794653
Target:  5'- -cGUCGGGGCCGaCGaugUAGUCGUc -3'
miRNA:   3'- aaUAGUCCCGGCgGCguaAUCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 140931 0.76 0.311248
Target:  5'- ---gCGGGGCCGCCGC---GGCCGUu -3'
miRNA:   3'- aauaGUCCCGGCGGCGuaaUCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 142642 0.66 0.812426
Target:  5'- ----aGGGGCUGCCGCcggcaCCGCGc -3'
miRNA:   3'- aauagUCCCGGCGGCGuaaucGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 147454 0.72 0.497132
Target:  5'- -aGUgGGGGCCGCUGaucucuGCCGCGc -3'
miRNA:   3'- aaUAgUCCCGGCGGCguaau-CGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 154694 0.66 0.812426
Target:  5'- ----aGGGGCUGCCGCcggcaCCGCGc -3'
miRNA:   3'- aauagUCCCGGCGGCGuaaucGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 156406 0.76 0.311248
Target:  5'- ---gCGGGGCCGCCGC---GGCCGUu -3'
miRNA:   3'- aauaGUCCCGGCGGCGuaaUCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 158256 0.67 0.794653
Target:  5'- -cGUCGGGGCCGaCGaugUAGUCGUc -3'
miRNA:   3'- aaUAGUCCCGGCgGCguaAUCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 158359 0.66 0.83784
Target:  5'- -gAUUGGcGcGCCGCCGUcaccGCCGCGg -3'
miRNA:   3'- aaUAGUC-C-CGGCGGCGuaauCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 158845 0.72 0.506785
Target:  5'- ---cCAGaGGCCGCgGCcgcGGCCGCGg -3'
miRNA:   3'- aauaGUC-CCGGCGgCGuaaUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 160166 0.96 0.014308
Target:  5'- gUUAUCAGGGCCaCCGCAUUAGCCGCGa -3'
miRNA:   3'- -AAUAGUCCCGGcGGCGUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 161076 0.67 0.747813
Target:  5'- ---aCAGGuGCuCGCCuGgGUUGGCCGUGu -3'
miRNA:   3'- aauaGUCC-CG-GCGG-CgUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 161471 0.79 0.199332
Target:  5'- -gAUCGGGGCgGCCaggccaucggacggaGCAUUGGCUGCGg -3'
miRNA:   3'- aaUAGUCCCGgCGG---------------CGUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 163393 0.67 0.794653
Target:  5'- ---cCAGGGuCCGCCGCGcgcauGCuCGCu -3'
miRNA:   3'- aauaGUCCC-GGCGGCGUaau--CG-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.