Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9763 | 5' | -57.7 | NC_002577.1 | + | 47 | 0.67 | 0.776294 |
Target: 5'- -----cGGGCUGCCGCAcc--CCGCGa -3' miRNA: 3'- aauaguCCCGGCGGCGUaaucGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 1392 | 0.66 | 0.821072 |
Target: 5'- -gGUCGGGGCuaggagCGcCCGCGUgcgcgaugaAGCCGCc -3' miRNA: 3'- aaUAGUCCCG------GC-GGCGUAa--------UCGGCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 1576 | 0.72 | 0.481863 |
Target: 5'- -gGUCAGGGCgUGCCGCGgauugagggucggGGCCgGCGa -3' miRNA: 3'- aaUAGUCCCG-GCGGCGUaa-----------UCGG-CGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 4639 | 0.71 | 0.566184 |
Target: 5'- -----cGGGCCGCgcUGCAgggaUGGCCGCGg -3' miRNA: 3'- aauaguCCCGGCG--GCGUa---AUCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 5599 | 0.66 | 0.829546 |
Target: 5'- aUAUCAGaGGaaGCCGCucggaccGCUGCGa -3' miRNA: 3'- aAUAGUC-CCggCGGCGuaau---CGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 9884 | 0.69 | 0.668073 |
Target: 5'- -cGUCAGGGaacucuauuCC-CCGCAUUaccacauggacgGGCCGCGg -3' miRNA: 3'- aaUAGUCCC---------GGcGGCGUAA------------UCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 10113 | 0.7 | 0.576279 |
Target: 5'- -gGUguGGGaaaCGCCGCGac-GCCGCGg -3' miRNA: 3'- aaUAguCCCg--GCGGCGUaauCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 13905 | 0.66 | 0.821072 |
Target: 5'- ---gCAGGGUCGCCGg--UAGUCGUu -3' miRNA: 3'- aauaGUCCCGGCGGCguaAUCGGCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 27034 | 0.66 | 0.842728 |
Target: 5'- ----gGGGGCCGCCGUAgauguuuucaagAGCgGCc -3' miRNA: 3'- aauagUCCCGGCGGCGUaa----------UCGgCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 41766 | 0.72 | 0.497132 |
Target: 5'- --uUCGGGGCCGgucaCGCuucuguugGGCCGCGa -3' miRNA: 3'- aauAGUCCCGGCg---GCGuaa-----UCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 49267 | 0.69 | 0.678236 |
Target: 5'- --uUUAGGGUCGCCGUAUuuauuggcaUGGuuGUGg -3' miRNA: 3'- aauAGUCCCGGCGGCGUA---------AUCggCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 97872 | 0.67 | 0.794653 |
Target: 5'- --uUCucGGGCCGacauuguuuuCCGCGacAGCCGCGg -3' miRNA: 3'- aauAGu-CCCGGC----------GGCGUaaUCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 109242 | 0.68 | 0.697433 |
Target: 5'- -aAUCAGGaaGCCGCUGCGUUgcuuccaacggaaGGCgGCa -3' miRNA: 3'- aaUAGUCC--CGGCGGCGUAA-------------UCGgCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 112097 | 0.66 | 0.83784 |
Target: 5'- -aGUCAcGGGCCauGCUGCGgaacuGCCGUa -3' miRNA: 3'- aaUAGU-CCCGG--CGGCGUaau--CGGCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 123501 | 0.7 | 0.576279 |
Target: 5'- -gGUguGGGaaaCGCCGCGac-GCCGCGg -3' miRNA: 3'- aaUAguCCCg--GCGGCGUaauCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 123730 | 0.69 | 0.668073 |
Target: 5'- -cGUCAGGGaacucuauuCC-CCGCAUUaccacauggacgGGCCGCGg -3' miRNA: 3'- aaUAGUCCC---------GGcGGCGUAA------------UCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 128974 | 0.71 | 0.566184 |
Target: 5'- -----cGGGCCGCgcUGCAgggaUGGCCGCGg -3' miRNA: 3'- aauaguCCCGGCG--GCGUa---AUCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 132038 | 0.72 | 0.481863 |
Target: 5'- -gGUCAGGGCgUGCCGCGgauugagggucggGGCCgGCGa -3' miRNA: 3'- aaUAGUCCCG-GCGGCGUaa-----------UCGG-CGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 132222 | 0.66 | 0.821072 |
Target: 5'- -gGUCGGGGCuaggagCGcCCGCGUgcgcgaugaAGCCGCc -3' miRNA: 3'- aaUAGUCCCG------GC-GGCGUAa--------UCGGCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 133566 | 0.67 | 0.776294 |
Target: 5'- -----cGGGCUGCCGCAcc--CCGCGa -3' miRNA: 3'- aauaguCCCGGCGGCGUaaucGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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