Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9763 | 5' | -57.7 | NC_002577.1 | + | 140931 | 0.76 | 0.311248 |
Target: 5'- ---gCGGGGCCGCCGC---GGCCGUu -3' miRNA: 3'- aauaGUCCCGGCGGCGuaaUCGGCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 132222 | 0.66 | 0.821072 |
Target: 5'- -gGUCGGGGCuaggagCGcCCGCGUgcgcgaugaAGCCGCc -3' miRNA: 3'- aaUAGUCCCG------GC-GGCGUAa--------UCGGCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 158359 | 0.66 | 0.83784 |
Target: 5'- -gAUUGGcGcGCCGCCGUcaccGCCGCGg -3' miRNA: 3'- aaUAGUC-C-CGGCGGCGuaauCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 27034 | 0.66 | 0.842728 |
Target: 5'- ----gGGGGCCGCCGUAgauguuuucaagAGCgGCc -3' miRNA: 3'- aauagUCCCGGCGGCGUaa----------UCGgCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 123501 | 0.7 | 0.576279 |
Target: 5'- -gGUguGGGaaaCGCCGCGac-GCCGCGg -3' miRNA: 3'- aaUAguCCCg--GCGGCGUaauCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 9884 | 0.69 | 0.668073 |
Target: 5'- -cGUCAGGGaacucuauuCC-CCGCAUUaccacauggacgGGCCGCGg -3' miRNA: 3'- aaUAGUCCC---------GGcGGCGUAA------------UCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 109242 | 0.68 | 0.697433 |
Target: 5'- -aAUCAGGaaGCCGCUGCGUUgcuuccaacggaaGGCgGCa -3' miRNA: 3'- aaUAGUCC--CGGCGGCGUAA-------------UCGgCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 136262 | 0.67 | 0.747813 |
Target: 5'- ---aCAGGuGCuCGCCuGgGUUGGCCGUGu -3' miRNA: 3'- aauaGUCC-CG-GCGG-CgUAAUCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 137172 | 1.07 | 0.002567 |
Target: 5'- gUUAUCAGGGCCGCCGCAUUAGCCGCGa -3' miRNA: 3'- -AAUAGUCCCGGCGGCGUAAUCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 133934 | 0.67 | 0.794653 |
Target: 5'- ---cCAGGGuCCGCCGCGcgcauGCuCGCu -3' miRNA: 3'- aauaGUCCC-GGCGGCGUaau--CG-GCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 97872 | 0.67 | 0.794653 |
Target: 5'- --uUCucGGGCCGacauuguuuuCCGCGacAGCCGCGg -3' miRNA: 3'- aauAGu-CCCGGC----------GGCGUaaUCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 132038 | 0.72 | 0.481863 |
Target: 5'- -gGUCAGGGCgUGCCGCGgauugagggucggGGCCgGCGa -3' miRNA: 3'- aaUAGUCCCG-GCGGCGUaa-----------UCGG-CGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 139082 | 0.67 | 0.794653 |
Target: 5'- -cGUCGGGGCCGaCGaugUAGUCGUc -3' miRNA: 3'- aaUAGUCCCGGCgGCguaAUCGGCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 158845 | 0.72 | 0.506785 |
Target: 5'- ---cCAGaGGCCGCgGCcgcGGCCGCGg -3' miRNA: 3'- aauaGUC-CCGGCGgCGuaaUCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 47 | 0.67 | 0.776294 |
Target: 5'- -----cGGGCUGCCGCAcc--CCGCGa -3' miRNA: 3'- aauaguCCCGGCGGCGUaaucGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 154694 | 0.66 | 0.812426 |
Target: 5'- ----aGGGGCUGCCGCcggcaCCGCGc -3' miRNA: 3'- aauagUCCCGGCGGCGuaaucGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 112097 | 0.66 | 0.83784 |
Target: 5'- -aGUCAcGGGCCauGCUGCGgaacuGCCGUa -3' miRNA: 3'- aaUAGU-CCCGG--CGGCGUaau--CGGCGc -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 128974 | 0.71 | 0.566184 |
Target: 5'- -----cGGGCCGCgcUGCAgggaUGGCCGCGg -3' miRNA: 3'- aauaguCCCGGCG--GCGUa---AUCGGCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 49267 | 0.69 | 0.678236 |
Target: 5'- --uUUAGGGUCGCCGUAUuuauuggcaUGGuuGUGg -3' miRNA: 3'- aauAGUCCCGGCGGCGUA---------AUCggCGC- -5' |
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9763 | 5' | -57.7 | NC_002577.1 | + | 135866 | 0.76 | 0.293102 |
Target: 5'- -gAUCGGGGUgGCCaggccaucggacggaGCAUUGGCUGCGg -3' miRNA: 3'- aaUAGUCCCGgCGG---------------CGUAAUCGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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