miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9763 5' -57.7 NC_002577.1 + 137172 1.07 0.002567
Target:  5'- gUUAUCAGGGCCGCCGCAUUAGCCGCGa -3'
miRNA:   3'- -AAUAGUCCCGGCGGCGUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 160166 0.96 0.014308
Target:  5'- gUUAUCAGGGCCaCCGCAUUAGCCGCGa -3'
miRNA:   3'- -AAUAGUCCCGGcGGCGUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 161471 0.79 0.199332
Target:  5'- -gAUCGGGGCgGCCaggccaucggacggaGCAUUGGCUGCGg -3'
miRNA:   3'- aaUAGUCCCGgCGG---------------CGUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 135866 0.76 0.293102
Target:  5'- -gAUCGGGGUgGCCaggccaucggacggaGCAUUGGCUGCGg -3'
miRNA:   3'- aaUAGUCCCGgCGG---------------CGUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 156406 0.76 0.311248
Target:  5'- ---gCGGGGCCGCCGC---GGCCGUu -3'
miRNA:   3'- aauaGUCCCGGCGGCGuaaUCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 140931 0.76 0.311248
Target:  5'- ---gCGGGGCCGCCGC---GGCCGUu -3'
miRNA:   3'- aauaGUCCCGGCGGCGuaaUCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 132038 0.72 0.481863
Target:  5'- -gGUCAGGGCgUGCCGCGgauugagggucggGGCCgGCGa -3'
miRNA:   3'- aaUAGUCCCG-GCGGCGUaa-----------UCGG-CGC- -5'
9763 5' -57.7 NC_002577.1 + 1576 0.72 0.481863
Target:  5'- -gGUCAGGGCgUGCCGCGgauugagggucggGGCCgGCGa -3'
miRNA:   3'- aaUAGUCCCG-GCGGCGUaa-----------UCGG-CGC- -5'
9763 5' -57.7 NC_002577.1 + 147454 0.72 0.497132
Target:  5'- -aGUgGGGGCCGCUGaucucuGCCGCGc -3'
miRNA:   3'- aaUAgUCCCGGCGGCguaau-CGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 41766 0.72 0.497132
Target:  5'- --uUCGGGGCCGgucaCGCuucuguugGGCCGCGa -3'
miRNA:   3'- aauAGUCCCGGCg---GCGuaa-----UCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 158845 0.72 0.506785
Target:  5'- ---cCAGaGGCCGCgGCcgcGGCCGCGg -3'
miRNA:   3'- aauaGUC-CCGGCGgCGuaaUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 138492 0.72 0.506785
Target:  5'- ---cCAGaGGCCGCgGCcgcGGCCGCGg -3'
miRNA:   3'- aauaGUC-CCGGCGgCGuaaUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 128974 0.71 0.566184
Target:  5'- -----cGGGCCGCgcUGCAgggaUGGCCGCGg -3'
miRNA:   3'- aauaguCCCGGCG--GCGUa---AUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 4639 0.71 0.566184
Target:  5'- -----cGGGCCGCgcUGCAgggaUGGCCGCGg -3'
miRNA:   3'- aauaguCCCGGCG--GCGUa---AUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 123501 0.7 0.576279
Target:  5'- -gGUguGGGaaaCGCCGCGac-GCCGCGg -3'
miRNA:   3'- aaUAguCCCg--GCGGCGUaauCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 10113 0.7 0.576279
Target:  5'- -gGUguGGGaaaCGCCGCGac-GCCGCGg -3'
miRNA:   3'- aaUAguCCCg--GCGGCGUaauCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 9884 0.69 0.668073
Target:  5'- -cGUCAGGGaacucuauuCC-CCGCAUUaccacauggacgGGCCGCGg -3'
miRNA:   3'- aaUAGUCCC---------GGcGGCGUAA------------UCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 123730 0.69 0.668073
Target:  5'- -cGUCAGGGaacucuauuCC-CCGCAUUaccacauggacgGGCCGCGg -3'
miRNA:   3'- aaUAGUCCC---------GGcGGCGUAA------------UCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 49267 0.69 0.678236
Target:  5'- --uUUAGGGUCGCCGUAUuuauuggcaUGGuuGUGg -3'
miRNA:   3'- aauAGUCCCGGCGGCGUA---------AUCggCGC- -5'
9763 5' -57.7 NC_002577.1 + 109242 0.68 0.697433
Target:  5'- -aAUCAGGaaGCCGCUGCGUUgcuuccaacggaaGGCgGCa -3'
miRNA:   3'- aaUAGUCC--CGGCGGCGUAA-------------UCGgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.