Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9764 | 5' | -63.4 | NC_002577.1 | + | 119072 | 0.66 | 0.577051 |
Target: 5'- -aGAcGGCCGUGACGCacaccacgugCCGGUacauuagGCACg -3' miRNA: 3'- aaCUuCCGGCGCUGCGg---------GGCCG-------CGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 121564 | 0.73 | 0.212464 |
Target: 5'- -aGGAGGCgGCGggcaucuuguaccGCGCgCUCGGCGCGCc -3' miRNA: 3'- aaCUUCCGgCGC-------------UGCG-GGGCCGCGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 121789 | 0.72 | 0.274756 |
Target: 5'- -cGAGGcGCaCGCG-CGCCugcuCCGGCGCGCc -3' miRNA: 3'- aaCUUC-CG-GCGCuGCGG----GGCCGCGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 122561 | 0.71 | 0.287425 |
Target: 5'- -gGggGGCgGCGuuucuaGcCCCCGGCGCGg -3' miRNA: 3'- aaCuuCCGgCGCug----C-GGGGCCGCGUg -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 123494 | 0.68 | 0.421043 |
Target: 5'- gUGGAGgggugugggaaacGCCGCGACGCCgCGGCcCGu -3' miRNA: 3'- aACUUC-------------CGGCGCUGCGGgGCCGcGUg -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 123699 | 0.76 | 0.148236 |
Target: 5'- aUGGacGGGCCGCGGCGUCgCGGCGUu- -3' miRNA: 3'- aACU--UCCGGCGCUGCGGgGCCGCGug -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 125315 | 0.66 | 0.558658 |
Target: 5'- -----cGCUGCGGCGUUuaGGCGCGCa -3' miRNA: 3'- aacuucCGGCGCUGCGGggCCGCGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 125448 | 0.67 | 0.499996 |
Target: 5'- -cGAAGGCCGUacggacaccgguGCGUCCgGGCGCuCg -3' miRNA: 3'- aaCUUCCGGCGc-----------UGCGGGgCCGCGuG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 129211 | 0.66 | 0.549043 |
Target: 5'- -aGucGGCCGUaggagagcacGCGCCCCcccauacucGGCGCGCg -3' miRNA: 3'- aaCuuCCGGCGc---------UGCGGGG---------CCGCGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 130256 | 0.68 | 0.439007 |
Target: 5'- -gGAAcGCCGCGGgacgaagcCGCCCCGGUaaaguccagacGCGCg -3' miRNA: 3'- aaCUUcCGGCGCU--------GCGGGGCCG-----------CGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 132570 | 0.68 | 0.465412 |
Target: 5'- -gGggGGCUgGCGGagaccgccucUGUCCCGGCGCuCg -3' miRNA: 3'- aaCuuCCGG-CGCU----------GCGGGGCCGCGuG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 134127 | 0.67 | 0.483465 |
Target: 5'- ----uGGCCGCGcggaGCCgCCGGCGguCg -3' miRNA: 3'- aacuuCCGGCGCug--CGG-GGCCGCguG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 135079 | 0.66 | 0.549043 |
Target: 5'- -aGAAGcGCCgGCGA-GCCCgCGG-GCGCg -3' miRNA: 3'- aaCUUC-CGG-CGCUgCGGG-GCCgCGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 136084 | 0.68 | 0.455633 |
Target: 5'- aUGAcgccGGCCGCGgucaGCGCCgaaacguCCGGCGcCGCu -3' miRNA: 3'- aACUu---CCGGCGC----UGCGG-------GGCCGC-GUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 136988 | 0.71 | 0.307282 |
Target: 5'- --aGAGGCCGCGucgGCGUCCgcgagaaGGCGCGCc -3' miRNA: 3'- aacUUCCGGCGC---UGCGGGg------CCGCGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 137210 | 0.69 | 0.405177 |
Target: 5'- -aGAAGGCC-CGACGgCUgcaacgcgUGGCGCGCc -3' miRNA: 3'- aaCUUCCGGcGCUGCgGG--------GCCGCGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 137406 | 0.66 | 0.56832 |
Target: 5'- -aGAAGcGCCGCcACGaCCCCcuCGCACu -3' miRNA: 3'- aaCUUC-CGGCGcUGC-GGGGccGCGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 137567 | 1.07 | 0.000811 |
Target: 5'- aUUGAAGGCCGCGACGCCCCGGCGCACg -3' miRNA: 3'- -AACUUCCGGCGCUGCGGGGCCGCGUG- -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 137707 | 0.69 | 0.405177 |
Target: 5'- -cGcuGGCUGCaGACGCCaaGGCGCGu -3' miRNA: 3'- aaCuuCCGGCG-CUGCGGggCCGCGUg -5' |
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9764 | 5' | -63.4 | NC_002577.1 | + | 137718 | 0.66 | 0.587762 |
Target: 5'- -gGAGGGCCuGCugGACGUCCCcgaauaccgauuGGuCGCGCc -3' miRNA: 3'- aaCUUCCGG-CG--CUGCGGGG------------CC-GCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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