miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9764 5' -63.4 NC_002577.1 + 1043 0.68 0.465412
Target:  5'- -gGggGGCUgGCGGagaccgccucUGUCCCGGCGCuCg -3'
miRNA:   3'- aaCuuCCGG-CGCU----------GCGGGGCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 3358 0.68 0.439007
Target:  5'- -gGAAcGCCGCGGgacgaagcCGCCCCGGUaaaguccagacGCGCg -3'
miRNA:   3'- aaCUUcCGGCGCU--------GCGGGGCCG-----------CGUG- -5'
9764 5' -63.4 NC_002577.1 + 4403 0.66 0.549043
Target:  5'- -aGucGGCCGUaggagagcacGCGCCCCcccauacucGGCGCGCg -3'
miRNA:   3'- aaCuuCCGGCGc---------UGCGGGG---------CCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 8165 0.67 0.499996
Target:  5'- -cGAAGGCCGUacggacaccgguGCGUCCgGGCGCuCg -3'
miRNA:   3'- aaCUUCCGGCGc-----------UGCGGGgCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 8299 0.66 0.558658
Target:  5'- -----cGCUGCGGCGUUuaGGCGCGCa -3'
miRNA:   3'- aacuucCGGCGCUGCGGggCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 9915 0.76 0.148236
Target:  5'- aUGGacGGGCCGCGGCGUCgCGGCGUu- -3'
miRNA:   3'- aACU--UCCGGCGCUGCGGgGCCGCGug -5'
9764 5' -63.4 NC_002577.1 + 10120 0.68 0.421043
Target:  5'- gUGGAGgggugugggaaacGCCGCGACGCCgCGGCcCGu -3'
miRNA:   3'- aACUUC-------------CGGCGCUGCGGgGCCGcGUg -5'
9764 5' -63.4 NC_002577.1 + 10878 0.67 0.520532
Target:  5'- ---cGGGCCGCGACcCUCgCGGCGUcCg -3'
miRNA:   3'- aacuUCCGGCGCUGcGGG-GCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 11052 0.71 0.287425
Target:  5'- -gGggGGCgGCGuuucuaGcCCCCGGCGCGg -3'
miRNA:   3'- aaCuuCCGgCGCug----C-GGGGCCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 11909 0.72 0.274756
Target:  5'- -cGAGGcGCaCGCG-CGCCugcuCCGGCGCGCc -3'
miRNA:   3'- aaCUUC-CG-GCGCuGCGG----GGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 37337 0.7 0.365275
Target:  5'- gUGAAGGUCGaaAUGCCCaCGGCauuccGCACa -3'
miRNA:   3'- aACUUCCGGCgcUGCGGG-GCCG-----CGUG- -5'
9764 5' -63.4 NC_002577.1 + 44885 0.66 0.56832
Target:  5'- cUGuGGGGCUGUGACcCCCUGauguaucaaGCGCACg -3'
miRNA:   3'- aAC-UUCCGGCGCUGcGGGGC---------CGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 53508 0.68 0.456517
Target:  5'- ----cGGCCGC-ACGUccgacaugUCCGGCGCGCa -3'
miRNA:   3'- aacuuCCGGCGcUGCG--------GGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 72290 0.72 0.264946
Target:  5'- -cGAAGGUCGCGuaugcgccggguuuuGgGCCuuGGCGUACa -3'
miRNA:   3'- aaCUUCCGGCGC---------------UgCGGggCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 76177 0.67 0.520532
Target:  5'- -cGAAGGuCCGCuaauauaACGUCCgGGgGCGCa -3'
miRNA:   3'- aaCUUCC-GGCGc------UGCGGGgCCgCGUG- -5'
9764 5' -63.4 NC_002577.1 + 76428 0.66 0.578023
Target:  5'- -aGcAGGCgGCGGuCGggagUCCGGCGCACg -3'
miRNA:   3'- aaCuUCCGgCGCU-GCg---GGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 76889 0.67 0.474395
Target:  5'- -cGGcaGCCGCGuguaACGCaCCCGGCuGCGCu -3'
miRNA:   3'- aaCUucCGGCGC----UGCG-GGGCCG-CGUG- -5'
9764 5' -63.4 NC_002577.1 + 78385 0.66 0.558658
Target:  5'- -gGAaaAGGUCaaGACguGCCCCGGCauGCACg -3'
miRNA:   3'- aaCU--UCCGGcgCUG--CGGGGCCG--CGUG- -5'
9764 5' -63.4 NC_002577.1 + 80527 0.66 0.56832
Target:  5'- --uAAGGCaCGCgGAUGCCCgCGGCGgGa -3'
miRNA:   3'- aacUUCCG-GCG-CUGCGGG-GCCGCgUg -5'
9764 5' -63.4 NC_002577.1 + 106442 0.66 0.56832
Target:  5'- -gGcGGGUCagaGACGCCCCGGCGa-- -3'
miRNA:   3'- aaCuUCCGGcg-CUGCGGGGCCGCgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.