miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9764 5' -63.4 NC_002577.1 + 137567 1.07 0.000811
Target:  5'- aUUGAAGGCCGCGACGCCCCGGCGCACg -3'
miRNA:   3'- -AACUUCCGGCGCUGCGGGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 159771 1.07 0.000811
Target:  5'- aUUGAAGGCCGCGACGCCCCGGCGCACg -3'
miRNA:   3'- -AACUUCCGGCGCUGCGGGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 123699 0.76 0.148236
Target:  5'- aUGGacGGGCCGCGGCGUCgCGGCGUu- -3'
miRNA:   3'- aACU--UCCGGCGCUGCGGgGCCGCGug -5'
9764 5' -63.4 NC_002577.1 + 9915 0.76 0.148236
Target:  5'- aUGGacGGGCCGCGGCGUCgCGGCGUu- -3'
miRNA:   3'- aACU--UCCGGCGCUGCGGgGCCGCGug -5'
9764 5' -63.4 NC_002577.1 + 121564 0.73 0.212464
Target:  5'- -aGGAGGCgGCGggcaucuuguaccGCGCgCUCGGCGCGCc -3'
miRNA:   3'- aaCUUCCGgCGC-------------UGCG-GGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 72290 0.72 0.264946
Target:  5'- -cGAAGGUCGCGuaugcgccggguuuuGgGCCuuGGCGUACa -3'
miRNA:   3'- aaCUUCCGGCGC---------------UgCGGggCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 11909 0.72 0.274756
Target:  5'- -cGAGGcGCaCGCG-CGCCugcuCCGGCGCGCc -3'
miRNA:   3'- aaCUUC-CG-GCGCuGCGG----GGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 121789 0.72 0.274756
Target:  5'- -cGAGGcGCaCGCG-CGCCugcuCCGGCGCGCc -3'
miRNA:   3'- aaCUUC-CG-GCGCuGCGG----GGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 11052 0.71 0.287425
Target:  5'- -gGggGGCgGCGuuucuaGcCCCCGGCGCGg -3'
miRNA:   3'- aaCuuCCGgCGCug----C-GGGGCCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 122561 0.71 0.287425
Target:  5'- -gGggGGCgGCGuuucuaGcCCCCGGCGCGg -3'
miRNA:   3'- aaCuuCCGgCGCug----C-GGGGCCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 136988 0.71 0.307282
Target:  5'- --aGAGGCCGCGucgGCGUCCgcgagaaGGCGCGCc -3'
miRNA:   3'- aacUUCCGGCGC---UGCGGGg------CCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 160349 0.71 0.307282
Target:  5'- --aGAGGCCGCGucgGCGUCCgcgagaaGGCGCGCc -3'
miRNA:   3'- aacUUCCGGCGC---UGCGGGg------CCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 138314 0.7 0.350092
Target:  5'- ----cGGCCGCGGC-CUCUGGCaGCGCa -3'
miRNA:   3'- aacuuCCGGCGCUGcGGGGCCG-CGUG- -5'
9764 5' -63.4 NC_002577.1 + 159024 0.7 0.350092
Target:  5'- ----cGGCCGCGGC-CUCUGGCaGCGCa -3'
miRNA:   3'- aacuuCCGGCGCUGcGGGGCCG-CGUG- -5'
9764 5' -63.4 NC_002577.1 + 37337 0.7 0.365275
Target:  5'- gUGAAGGUCGaaAUGCCCaCGGCauuccGCACa -3'
miRNA:   3'- aACUUCCGGCgcUGCGGG-GCCG-----CGUG- -5'
9764 5' -63.4 NC_002577.1 + 156221 0.69 0.380907
Target:  5'- -cGAAacGGCCGCGGCgGCCCC-GCGguCc -3'
miRNA:   3'- aaCUU--CCGGCGCUG-CGGGGcCGCguG- -5'
9764 5' -63.4 NC_002577.1 + 141117 0.69 0.380907
Target:  5'- -cGAAacGGCCGCGGCgGCCCC-GCGguCc -3'
miRNA:   3'- aaCUU--CCGGCGCUG-CGGGGcCGCguG- -5'
9764 5' -63.4 NC_002577.1 + 137707 0.69 0.405177
Target:  5'- -cGcuGGCUGCaGACGCCaaGGCGCGu -3'
miRNA:   3'- aaCuuCCGGCG-CUGCGGggCCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 160128 0.69 0.405177
Target:  5'- -aGAAGGCC-CGACGgCUgcaacgcgUGGCGCGCc -3'
miRNA:   3'- aaCUUCCGGcGCUGCgGG--------GCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 137210 0.69 0.405177
Target:  5'- -aGAAGGCC-CGACGgCUgcaacgcgUGGCGCGCc -3'
miRNA:   3'- aaCUUCCGGcGCUGCgGG--------GCCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.