miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9764 5' -63.4 NC_002577.1 + 137567 1.07 0.000811
Target:  5'- aUUGAAGGCCGCGACGCCCCGGCGCACg -3'
miRNA:   3'- -AACUUCCGGCGCUGCGGGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 158847 0.67 0.483465
Target:  5'- --aGAGGCCGCGGCcgcgGCCgcggaggaCGGCGCGg -3'
miRNA:   3'- aacUUCCGGCGCUG----CGGg-------GCCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 76177 0.67 0.520532
Target:  5'- -cGAAGGuCCGCuaauauaACGUCCgGGgGCGCa -3'
miRNA:   3'- aaCUUCC-GGCGc------UGCGGGgCCgCGUG- -5'
9764 5' -63.4 NC_002577.1 + 159620 0.66 0.587762
Target:  5'- -gGAGGGCCuGCugGACGUCCCcgaauaccgauuGGuCGCGCc -3'
miRNA:   3'- aaCUUCCGG-CG--CUGCGGGG------------CC-GCGUG- -5'
9764 5' -63.4 NC_002577.1 + 11052 0.71 0.287425
Target:  5'- -gGggGGCgGCGuuucuaGcCCCCGGCGCGg -3'
miRNA:   3'- aaCuuCCGgCGCug----C-GGGGCCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 136988 0.71 0.307282
Target:  5'- --aGAGGCCGCGucgGCGUCCgcgagaaGGCGCGCc -3'
miRNA:   3'- aacUUCCGGCGC---UGCGGGg------CCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 37337 0.7 0.365275
Target:  5'- gUGAAGGUCGaaAUGCCCaCGGCauuccGCACa -3'
miRNA:   3'- aACUUCCGGCgcUGCGGG-GCCG-----CGUG- -5'
9764 5' -63.4 NC_002577.1 + 156221 0.69 0.380907
Target:  5'- -cGAAacGGCCGCGGCgGCCCC-GCGguCc -3'
miRNA:   3'- aaCUU--CCGGCGCUG-CGGGGcCGCguG- -5'
9764 5' -63.4 NC_002577.1 + 123494 0.68 0.421043
Target:  5'- gUGGAGgggugugggaaacGCCGCGACGCCgCGGCcCGu -3'
miRNA:   3'- aACUUC-------------CGGCGCUGCGGgGCCGcGUg -5'
9764 5' -63.4 NC_002577.1 + 134127 0.67 0.483465
Target:  5'- ----uGGCCGCGcggaGCCgCCGGCGguCg -3'
miRNA:   3'- aacuuCCGGCGCug--CGG-GGCCGCguG- -5'
9764 5' -63.4 NC_002577.1 + 136084 0.68 0.455633
Target:  5'- aUGAcgccGGCCGCGgucaGCGCCgaaacguCCGGCGcCGCu -3'
miRNA:   3'- aACUu---CCGGCGC----UGCGG-------GGCCGC-GUG- -5'
9764 5' -63.4 NC_002577.1 + 160128 0.69 0.405177
Target:  5'- -aGAAGGCC-CGACGgCUgcaacgcgUGGCGCGCc -3'
miRNA:   3'- aaCUUCCGGcGCUGCgGG--------GCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 9915 0.76 0.148236
Target:  5'- aUGGacGGGCCGCGGCGUCgCGGCGUu- -3'
miRNA:   3'- aACU--UCCGGCGCUGCGGgGCCGCGug -5'
9764 5' -63.4 NC_002577.1 + 53508 0.68 0.456517
Target:  5'- ----cGGCCGC-ACGUccgacaugUCCGGCGCGCa -3'
miRNA:   3'- aacuuCCGGCGcUGCG--------GGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 121564 0.73 0.212464
Target:  5'- -aGGAGGCgGCGggcaucuuguaccGCGCgCUCGGCGCGCc -3'
miRNA:   3'- aaCUUCCGgCGC-------------UGCG-GGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 137707 0.69 0.405177
Target:  5'- -cGcuGGCUGCaGACGCCaaGGCGCGu -3'
miRNA:   3'- aaCuuCCGGCG-CUGCGGggCCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 1043 0.68 0.465412
Target:  5'- -gGggGGCUgGCGGagaccgccucUGUCCCGGCGCuCg -3'
miRNA:   3'- aaCuuCCGG-CGCU----------GCGGGGCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 8165 0.67 0.499996
Target:  5'- -cGAAGGCCGUacggacaccgguGCGUCCgGGCGCuCg -3'
miRNA:   3'- aaCUUCCGGCGc-----------UGCGGGgCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 11909 0.72 0.274756
Target:  5'- -cGAGGcGCaCGCG-CGCCugcuCCGGCGCGCc -3'
miRNA:   3'- aaCUUC-CG-GCGCuGCGG----GGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 138314 0.7 0.350092
Target:  5'- ----cGGCCGCGGC-CUCUGGCaGCGCa -3'
miRNA:   3'- aacuuCCGGCGCUGcGGGGCCG-CGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.