miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9765 5' -60.8 NC_002577.1 + 125231 0.66 0.709173
Target:  5'- cUCCGCCGuuc-GCCCG-GCCgAGCGCc -3'
miRNA:   3'- cAGGCGGCucucCGGGCuUGG-UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 3467 0.66 0.69946
Target:  5'- aGUCCGCCGGcaGGGCUCGAGCaa--ACa -3'
miRNA:   3'- -CAGGCGGCUc-UCCGGGCUUGgucgUG- -5'
9765 5' -60.8 NC_002577.1 + 161113 0.74 0.300462
Target:  5'- gGUCCcCCGGGGGGCgagCCGGgcGCCGGUACg -3'
miRNA:   3'- -CAGGcGGCUCUCCG---GGCU--UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 27936 0.69 0.551703
Target:  5'- uUUgGCCGucuuGcAGG-CCGGACCAGCACg -3'
miRNA:   3'- cAGgCGGCu---C-UCCgGGCUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 8383 0.66 0.709173
Target:  5'- cUCCGCCGuuc-GCCCG-GCCgAGCGCc -3'
miRNA:   3'- cAGGCGGCucucCGGGCuUGG-UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 136977 0.69 0.503971
Target:  5'- cGUCCGCguuUGGGaAGGuCCCGGACaGGCGCc -3'
miRNA:   3'- -CAGGCG---GCUC-UCC-GGGCUUGgUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 130147 0.66 0.69946
Target:  5'- aGUCCGCCGGcaGGGCUCGAGCaa--ACa -3'
miRNA:   3'- -CAGGCGGCUc-UCCGGGCUUGgucgUG- -5'
9765 5' -60.8 NC_002577.1 + 137216 0.66 0.69946
Target:  5'- -cCCG-CGAGaAGGCCCGAcgGCUgcaacgcguGGCGCg -3'
miRNA:   3'- caGGCgGCUC-UCCGGGCU--UGG---------UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 15414 0.7 0.485376
Target:  5'- aUCUGCCGuGGccGCCCGAccggguGCUAGCGCa -3'
miRNA:   3'- cAGGCGGC-UCucCGGGCU------UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 11146 0.66 0.689694
Target:  5'- uUCCGCUGGccGGCCCGccguCCgaaAGCGCg -3'
miRNA:   3'- cAGGCGGCUcuCCGGGCuu--GG---UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 122237 0.68 0.610607
Target:  5'- -cCCGUCGGGAGcgauCCCGGAUCGGaCGCc -3'
miRNA:   3'- caGGCGGCUCUCc---GGGCUUGGUC-GUG- -5'
9765 5' -60.8 NC_002577.1 + 108886 0.67 0.670035
Target:  5'- -gCCGCCaGGGGGCaauagcggUCGAGCCugAGCGCu -3'
miRNA:   3'- caGGCGGcUCUCCG--------GGCUUGG--UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 6639 0.67 0.670035
Target:  5'- ------gGGGAGGCCUGAacgGCCGGCGCg -3'
miRNA:   3'- caggcggCUCUCCGGGCU---UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 81274 0.67 0.650261
Target:  5'- --aCGCUGAGGuGGCCgCGGGCguggcgCAGCACg -3'
miRNA:   3'- cagGCGGCUCU-CCGG-GCUUG------GUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 133249 0.7 0.449212
Target:  5'- -aCC-CCGAGAGGCCCuAACCGcCACc -3'
miRNA:   3'- caGGcGGCUCUCCGGGcUUGGUcGUG- -5'
9765 5' -60.8 NC_002577.1 + 96827 0.67 0.640349
Target:  5'- -cCCuCCGAGAGGaCCGAagACgGGCGCc -3'
miRNA:   3'- caGGcGGCUCUCCgGGCU--UGgUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 122319 0.67 0.640349
Target:  5'- cUCCGCUuAGAGcGCCgGu-CCGGCGCu -3'
miRNA:   3'- cAGGCGGcUCUC-CGGgCuuGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 121859 0.7 0.485376
Target:  5'- --aCGCCGGaGGGCgCGGACCGGgCGCg -3'
miRNA:   3'- cagGCGGCUcUCCGgGCUUGGUC-GUG- -5'
9765 5' -60.8 NC_002577.1 + 159180 1.07 0.001383
Target:  5'- uGUCCGCCGAGAGGCCCGAACCAGCACc -3'
miRNA:   3'- -CAGGCGGCUCUCCGGGCUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 11500 0.75 0.233279
Target:  5'- cGUCCGUucgCGGGAaGCgCCGGACCGGCGCu -3'
miRNA:   3'- -CAGGCG---GCUCUcCG-GGCUUGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.