Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9765 | 5' | -60.8 | NC_002577.1 | + | 138158 | 1.07 | 0.001383 |
Target: 5'- uGUCCGCCGAGAGGCCCGAACCAGCACc -3' miRNA: 3'- -CAGGCGGCUCUCCGGGCUUGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 160122 | 0.66 | 0.69946 |
Target: 5'- -cCCG-CGAGaAGGCCCGAcgGCUgcaacgcguGGCGCg -3' miRNA: 3'- caGGCgGCUC-UCCGGGCU--UGG---------UCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 125231 | 0.66 | 0.709173 |
Target: 5'- cUCCGCCGuuc-GCCCG-GCCgAGCGCc -3' miRNA: 3'- cAGGCGGCucucCGGGCuUGG-UCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 11115 | 0.66 | 0.718824 |
Target: 5'- -cCCGCuuccCGAuuGGCCCGGACgGGCGu -3' miRNA: 3'- caGGCG----GCUcuCCGGGCUUGgUCGUg -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 38154 | 0.73 | 0.335621 |
Target: 5'- cGUCCGCCcgcgccAGAGGCCaauuGAACuCGGCGCc -3' miRNA: 3'- -CAGGCGGc-----UCUCCGGg---CUUG-GUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 365 | 0.7 | 0.449212 |
Target: 5'- -aCC-CCGAGAGGCCCuAACCGcCACc -3' miRNA: 3'- caGGcGGCUCUCCGGGcUUGGUcGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 160361 | 0.69 | 0.503971 |
Target: 5'- cGUCCGCguuUGGGaAGGuCCCGGACaGGCGCc -3' miRNA: 3'- -CAGGCG---GCUC-UCC-GGGCUUGgUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 7741 | 0.68 | 0.571193 |
Target: 5'- cUCCGCCGAcucgccGAccGCCCGGaacGCCGGUACu -3' miRNA: 3'- cAGGCGGCU------CUc-CGGGCU---UGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 11295 | 0.67 | 0.640349 |
Target: 5'- cUCCGCUuAGAGcGCCgGu-CCGGCGCu -3' miRNA: 3'- cAGGCGGcUCUC-CGGgCuuGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 3467 | 0.66 | 0.69946 |
Target: 5'- aGUCCGCCGGcaGGGCUCGAGCaa--ACa -3' miRNA: 3'- -CAGGCGGCUc-UCCGGGCUUGgucgUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 126974 | 0.67 | 0.670035 |
Target: 5'- ------gGGGAGGCCUGAacgGCCGGCGCg -3' miRNA: 3'- caggcggCUCUCCGGGCU---UGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 11377 | 0.68 | 0.610607 |
Target: 5'- -cCCGUCGGGAGcgauCCCGGAUCGGaCGCc -3' miRNA: 3'- caGGCGGCUCUCc---GGGCUUGGUC-GUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 122114 | 0.75 | 0.233279 |
Target: 5'- cGUCCGUucgCGGGAaGCgCCGGACCGGCGCu -3' miRNA: 3'- -CAGGCG---GCUCUcCG-GGCUUGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 153580 | 0.67 | 0.671021 |
Target: 5'- -gCUGCCccguuuaggcaaacGGGGCCCG-GCCGGCGCg -3' miRNA: 3'- caGGCGGcu------------CUCCGGGCuUGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 136225 | 0.74 | 0.300462 |
Target: 5'- gGUCCcCCGGGGGGCgagCCGGgcGCCGGUACg -3' miRNA: 3'- -CAGGcGGCUCUCCG---GGCU--UGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 4850 | 0.68 | 0.590844 |
Target: 5'- -aCCGCCGAGGGG---GGACaCGGCGCg -3' miRNA: 3'- caGGCGGCUCUCCgggCUUG-GUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 122468 | 0.66 | 0.689694 |
Target: 5'- uUCCGCUGGccGGCCCGccguCCgaaAGCGCg -3' miRNA: 3'- cAGGCGGCUcuCCGGGCuu--GG---UCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 150291 | 0.66 | 0.709173 |
Target: 5'- aUCUGuaGAuGAGGCCCGu-CCuGCGCu -3' miRNA: 3'- cAGGCggCU-CUCCGGGCuuGGuCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 16539 | 0.73 | 0.321206 |
Target: 5'- -gCCGCCGuGAGGCUCGcAGCCGGaGCc -3' miRNA: 3'- caGGCGGCuCUCCGGGC-UUGGUCgUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 11755 | 0.7 | 0.485376 |
Target: 5'- --aCGCCGGaGGGCgCGGACCGGgCGCg -3' miRNA: 3'- cagGCGGCUcUCCGgGCUUGGUC-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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