miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9765 5' -60.8 NC_002577.1 + 365 0.7 0.449212
Target:  5'- -aCC-CCGAGAGGCCCuAACCGcCACc -3'
miRNA:   3'- caGGcGGCUCUCCGGGcUUGGUcGUG- -5'
9765 5' -60.8 NC_002577.1 + 3467 0.66 0.69946
Target:  5'- aGUCCGCCGGcaGGGCUCGAGCaa--ACa -3'
miRNA:   3'- -CAGGCGGCUc-UCCGGGCUUGgucgUG- -5'
9765 5' -60.8 NC_002577.1 + 4850 0.68 0.590844
Target:  5'- -aCCGCCGAGGGG---GGACaCGGCGCg -3'
miRNA:   3'- caGGCGGCUCUCCgggCUUG-GUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 6639 0.67 0.670035
Target:  5'- ------gGGGAGGCCUGAacgGCCGGCGCg -3'
miRNA:   3'- caggcggCUCUCCGGGCU---UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 7741 0.68 0.571193
Target:  5'- cUCCGCCGAcucgccGAccGCCCGGaacGCCGGUACu -3'
miRNA:   3'- cAGGCGGCU------CUc-CGGGCU---UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 8383 0.66 0.709173
Target:  5'- cUCCGCCGuuc-GCCCG-GCCgAGCGCc -3'
miRNA:   3'- cAGGCGGCucucCGGGCuUGG-UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 10011 0.66 0.718824
Target:  5'- uUCCGCCuc---GUCCaGAGCCAGCGCg -3'
miRNA:   3'- cAGGCGGcucucCGGG-CUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 11115 0.66 0.718824
Target:  5'- -cCCGCuuccCGAuuGGCCCGGACgGGCGu -3'
miRNA:   3'- caGGCG----GCUcuCCGGGCUUGgUCGUg -5'
9765 5' -60.8 NC_002577.1 + 11146 0.66 0.689694
Target:  5'- uUCCGCUGGccGGCCCGccguCCgaaAGCGCg -3'
miRNA:   3'- cAGGCGGCUcuCCGGGCuu--GG---UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 11295 0.67 0.640349
Target:  5'- cUCCGCUuAGAGcGCCgGu-CCGGCGCu -3'
miRNA:   3'- cAGGCGGcUCUC-CGGgCuuGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 11377 0.68 0.610607
Target:  5'- -cCCGUCGGGAGcgauCCCGGAUCGGaCGCc -3'
miRNA:   3'- caGGCGGCUCUCc---GGGCUUGGUC-GUG- -5'
9765 5' -60.8 NC_002577.1 + 11500 0.75 0.233279
Target:  5'- cGUCCGUucgCGGGAaGCgCCGGACCGGCGCu -3'
miRNA:   3'- -CAGGCG---GCUCUcCG-GGCUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 11755 0.7 0.485376
Target:  5'- --aCGCCGGaGGGCgCGGACCGGgCGCg -3'
miRNA:   3'- cagGCGGCUcUCCGgGCUUGGUC-GUG- -5'
9765 5' -60.8 NC_002577.1 + 12039 0.66 0.709173
Target:  5'- -gUCGcCCGGGucgucGCCCGggUCGGCGCc -3'
miRNA:   3'- caGGC-GGCUCuc---CGGGCuuGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 15414 0.7 0.485376
Target:  5'- aUCUGCCGuGGccGCCCGAccggguGCUAGCGCa -3'
miRNA:   3'- cAGGCGGC-UCucCGGGCU------UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 16539 0.73 0.321206
Target:  5'- -gCCGCCGuGAGGCUCGcAGCCGGaGCc -3'
miRNA:   3'- caGGCGGCuCUCCGGGC-UUGGUCgUG- -5'
9765 5' -60.8 NC_002577.1 + 27936 0.69 0.551703
Target:  5'- uUUgGCCGucuuGcAGG-CCGGACCAGCACg -3'
miRNA:   3'- cAGgCGGCu---C-UCCgGGCUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 38154 0.73 0.335621
Target:  5'- cGUCCGCCcgcgccAGAGGCCaauuGAACuCGGCGCc -3'
miRNA:   3'- -CAGGCGGc-----UCUCCGGg---CUUG-GUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 81274 0.67 0.650261
Target:  5'- --aCGCUGAGGuGGCCgCGGGCguggcgCAGCACg -3'
miRNA:   3'- cagGCGGCUCU-CCGG-GCUUG------GUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 86808 0.66 0.679883
Target:  5'- aUCCGCCaGAGcgGGGCCgGGACUgccaaucgAGCAa -3'
miRNA:   3'- cAGGCGG-CUC--UCCGGgCUUGG--------UCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.