miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9765 5' -60.8 NC_002577.1 + 159180 1.07 0.001383
Target:  5'- uGUCCGCCGAGAGGCCCGAACCAGCACc -3'
miRNA:   3'- -CAGGCGGCUCUCCGGGCUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 138158 1.07 0.001383
Target:  5'- uGUCCGCCGAGAGGCCCGAACCAGCACc -3'
miRNA:   3'- -CAGGCGGCUCUCCGGGCUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 122114 0.75 0.233279
Target:  5'- cGUCCGUucgCGGGAaGCgCCGGACCGGCGCu -3'
miRNA:   3'- -CAGGCG---GCUCUcCG-GGCUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 11500 0.75 0.233279
Target:  5'- cGUCCGUucgCGGGAaGCgCCGGACCGGCGCu -3'
miRNA:   3'- -CAGGCG---GCUCUcCG-GGCUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 161113 0.74 0.300462
Target:  5'- gGUCCcCCGGGGGGCgagCCGGgcGCCGGUACg -3'
miRNA:   3'- -CAGGcGGCUCUCCG---GGCU--UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 136225 0.74 0.300462
Target:  5'- gGUCCcCCGGGGGGCgagCCGGgcGCCGGUACg -3'
miRNA:   3'- -CAGGcGGCUCUCCG---GGCU--UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 16539 0.73 0.321206
Target:  5'- -gCCGCCGuGAGGCUCGcAGCCGGaGCc -3'
miRNA:   3'- caGGCGGCuCUCCGGGC-UUGGUCgUG- -5'
9765 5' -60.8 NC_002577.1 + 38154 0.73 0.335621
Target:  5'- cGUCCGCCcgcgccAGAGGCCaauuGAACuCGGCGCc -3'
miRNA:   3'- -CAGGCGGc-----UCUCCGGg---CUUG-GUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 365 0.7 0.449212
Target:  5'- -aCC-CCGAGAGGCCCuAACCGcCACc -3'
miRNA:   3'- caGGcGGCUCUCCGGGcUUGGUcGUG- -5'
9765 5' -60.8 NC_002577.1 + 133249 0.7 0.449212
Target:  5'- -aCC-CCGAGAGGCCCuAACCGcCACc -3'
miRNA:   3'- caGGcGGCUCUCCGGGcUUGGUcGUG- -5'
9765 5' -60.8 NC_002577.1 + 15414 0.7 0.485376
Target:  5'- aUCUGCCGuGGccGCCCGAccggguGCUAGCGCa -3'
miRNA:   3'- cAGGCGGC-UCucCGGGCU------UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 121859 0.7 0.485376
Target:  5'- --aCGCCGGaGGGCgCGGACCGGgCGCg -3'
miRNA:   3'- cagGCGGCUcUCCGgGCUUGGUC-GUG- -5'
9765 5' -60.8 NC_002577.1 + 11755 0.7 0.485376
Target:  5'- --aCGCCGGaGGGCgCGGACCGGgCGCg -3'
miRNA:   3'- cagGCGGCUcUCCGgGCUUGGUC-GUG- -5'
9765 5' -60.8 NC_002577.1 + 136977 0.69 0.503971
Target:  5'- cGUCCGCguuUGGGaAGGuCCCGGACaGGCGCc -3'
miRNA:   3'- -CAGGCG---GCUC-UCC-GGGCUUGgUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 160361 0.69 0.503971
Target:  5'- cGUCCGCguuUGGGaAGGuCCCGGACaGGCGCc -3'
miRNA:   3'- -CAGGCG---GCUC-UCC-GGGCUUGgUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 27936 0.69 0.551703
Target:  5'- uUUgGCCGucuuGcAGG-CCGGACCAGCACg -3'
miRNA:   3'- cAGgCGGCu---C-UCCgGGCUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 7741 0.68 0.571193
Target:  5'- cUCCGCCGAcucgccGAccGCCCGGaacGCCGGUACu -3'
miRNA:   3'- cAGGCGGCU------CUc-CGGGCU---UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 125873 0.68 0.571193
Target:  5'- cUCCGCCGAcucgccGAccGCCCGGaacGCCGGUACu -3'
miRNA:   3'- cAGGCGGCU------CUc-CGGGCU---UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 128764 0.68 0.590844
Target:  5'- -aCCGCCGAGGGG---GGACaCGGCGCg -3'
miRNA:   3'- caGGCGGCUCUCCgggCUUG-GUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 4850 0.68 0.590844
Target:  5'- -aCCGCCGAGGGG---GGACaCGGCGCg -3'
miRNA:   3'- caGGCGGCUCUCCgggCUUG-GUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.