miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9766 3' -66.4 NC_002577.1 + 155802 0.68 0.370542
Target:  5'- cAGUGCUgccggCGuCGCCaCGGuUGGacCGGCGCGCg -3'
miRNA:   3'- -UCAUGG-----GC-GCGG-GCC-GCC--GCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 137777 0.7 0.273586
Target:  5'- cAGUACCUGCGagucauagacacgCUGGCGGCGaUGUGCg -3'
miRNA:   3'- -UCAUGGGCGCg------------GGCCGCCGCcGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 38158 0.66 0.458949
Target:  5'- --cGCCCGCGCCagaGGCcaauugaacucGGCgccGGCauGCGCu -3'
miRNA:   3'- ucaUGGGCGCGGg--CCG-----------CCG---CCG--CGCG- -5'
9766 3' -66.4 NC_002577.1 + 121760 0.67 0.401332
Target:  5'- ---cUCgGCGUCCGGaGG-GGCGCGCg -3'
miRNA:   3'- ucauGGgCGCGGGCCgCCgCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 125673 0.71 0.23642
Target:  5'- aAGUACCgGCGuuCCgGGCGGuCGGCGagucgGCg -3'
miRNA:   3'- -UCAUGGgCGC--GGgCCGCC-GCCGCg----CG- -5'
9766 3' -66.4 NC_002577.1 + 128578 0.67 0.450446
Target:  5'- --cGCgCCGUGUCCccccuCGGCGGUGUGCa -3'
miRNA:   3'- ucaUG-GGCGCGGGcc---GCCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 138766 0.71 0.226024
Target:  5'- aGGUGUCUgaaucggcguaGCGCCgCGGCggugacGGCGGCGCGCc -3'
miRNA:   3'- -UCAUGGG-----------CGCGG-GCCG------CCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 4187 0.72 0.215528
Target:  5'- gAGU-CCUGCGCUCgcacaggcagcugGGCGGCGGUGCu- -3'
miRNA:   3'- -UCAuGGGCGCGGG-------------CCGCCGCCGCGcg -5'
9766 3' -66.4 NC_002577.1 + 10946 0.67 0.401332
Target:  5'- cGGU-CCCGCGCUuuCGGaCGGCGG-GCcgGCc -3'
miRNA:   3'- -UCAuGGGCGCGG--GCC-GCCGCCgCG--CG- -5'
9766 3' -66.4 NC_002577.1 + 153379 0.66 0.484958
Target:  5'- cGUACCgCGCGCCaauuuucGUGuaGGUGUGCg -3'
miRNA:   3'- uCAUGG-GCGCGGgc-----CGCcgCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 132234 0.69 0.325416
Target:  5'- gAGcGCCCGCGUgcgcgaugaagccgCCGucuccCGGCGGCGaCGCa -3'
miRNA:   3'- -UCaUGGGCGCG--------------GGCc----GCCGCCGC-GCG- -5'
9766 3' -66.4 NC_002577.1 + 92595 0.7 0.282048
Target:  5'- --aACCCGUGuCCCGaaaacGCGGCGGC-CGUc -3'
miRNA:   3'- ucaUGGGCGC-GGGC-----CGCCGCCGcGCG- -5'
9766 3' -66.4 NC_002577.1 + 55403 0.67 0.425467
Target:  5'- --cGCCC-CGUCCGGaaaauacgaaCGG-GGCGCGCu -3'
miRNA:   3'- ucaUGGGcGCGGGCC----------GCCgCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 157023 0.66 0.473599
Target:  5'- uGGUgGCCCGCcagCCGGgGagccacgcuauguuGUGGCGCGCg -3'
miRNA:   3'- -UCA-UGGGCGcg-GGCCgC--------------CGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 82311 0.67 0.401332
Target:  5'- -uUGCCCuaGUagCGGCGcguaGUGGCGCGCa -3'
miRNA:   3'- ucAUGGGcgCGg-GCCGC----CGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 157120 0.67 0.417326
Target:  5'- --aGCCCGCGCCCcuGGUacGGgGGCcccCGCc -3'
miRNA:   3'- ucaUGGGCGCGGG--CCG--CCgCCGc--GCG- -5'
9766 3' -66.4 NC_002577.1 + 129426 0.72 0.215528
Target:  5'- gAGU-CCUGCGCUCgcacaggcagcugGGCGGCGGUGCu- -3'
miRNA:   3'- -UCAuGGGCGCGGG-------------CCGCCGCCGCGcg -5'
9766 3' -66.4 NC_002577.1 + 97725 0.66 0.458949
Target:  5'- ---gUCCGUGCUgGGCGGgagacGCGCGCg -3'
miRNA:   3'- ucauGGGCGCGGgCCGCCgc---CGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 158571 0.71 0.226024
Target:  5'- aGGUGUCUgaaucggcguaGCGCCgCGGCggugacGGCGGCGCGCc -3'
miRNA:   3'- -UCAUGGG-----------CGCGG-GCCG------CCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 152799 0.71 0.223992
Target:  5'- --gGCCCGCGCUgcaguucaccgagCGuGCGGCGGCaauuuccaggaccuGCGCg -3'
miRNA:   3'- ucaUGGGCGCGG-------------GC-CGCCGCCG--------------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.