Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9766 | 3' | -66.4 | NC_002577.1 | + | 139346 | 1.1 | 0.000337 |
Target: 5'- gAGUACCCGCGCCCGGCGGCGGCGCGCa -3' miRNA: 3'- -UCAUGGGCGCGGGCCGCCGCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 121550 | 0.68 | 0.385735 |
Target: 5'- --cGCUuuCG-GCCCGGaggaGGCGGCGgGCa -3' miRNA: 3'- ucaUGG--GCgCGGGCCg---CCGCCGCgCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 121760 | 0.67 | 0.401332 |
Target: 5'- ---cUCgGCGUCCGGaGG-GGCGCGCg -3' miRNA: 3'- ucauGGgCGCGGGCCgCCgCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 18790 | 0.66 | 0.506262 |
Target: 5'- --cACCCGCGCCgUGGacggaacuacgcaucCGGUGGUGCcCg -3' miRNA: 3'- ucaUGGGCGCGG-GCC---------------GCCGCCGCGcG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 128999 | 0.72 | 0.206394 |
Target: 5'- gGGUACgCGCGCCgaguaUGGgGG-GGCGCGUg -3' miRNA: 3'- -UCAUGgGCGCGG-----GCCgCCgCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 122347 | 0.72 | 0.206394 |
Target: 5'- cGUGuuCGUGUCCGGCcGCGGCccGCGCc -3' miRNA: 3'- uCAUggGCGCGGGCCGcCGCCG--CGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 138766 | 0.71 | 0.226024 |
Target: 5'- aGGUGUCUgaaucggcguaGCGCCgCGGCggugacGGCGGCGCGCc -3' miRNA: 3'- -UCAUGGG-----------CGCGG-GCCG------CCGCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 125673 | 0.71 | 0.23642 |
Target: 5'- aAGUACCgGCGuuCCgGGCGGuCGGCGagucgGCg -3' miRNA: 3'- -UCAUGGgCGC--GGgCCGCC-GCCGCg----CG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 162353 | 0.69 | 0.311971 |
Target: 5'- --gACCCGUgGCCUGuacgaggaggaggaGCGGCGGCGaaaGCg -3' miRNA: 3'- ucaUGGGCG-CGGGC--------------CGCCGCCGCg--CG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 155802 | 0.68 | 0.370542 |
Target: 5'- cAGUGCUgccggCGuCGCCaCGGuUGGacCGGCGCGCg -3' miRNA: 3'- -UCAUGG-----GC-GCGG-GCC-GCC--GCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 132234 | 0.69 | 0.325416 |
Target: 5'- gAGcGCCCGCGUgcgcgaugaagccgCCGucuccCGGCGGCGaCGCa -3' miRNA: 3'- -UCaUGGGCGCG--------------GGCc----GCCGCCGC-GCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 92595 | 0.7 | 0.282048 |
Target: 5'- --aACCCGUGuCCCGaaaacGCGGCGGC-CGUc -3' miRNA: 3'- ucaUGGGCGC-GGGC-----CGCCGCCGcGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 121582 | 0.82 | 0.04241 |
Target: 5'- uGUACCgCGCGCUCGGCGcGCcggagcaGGCGCGCg -3' miRNA: 3'- uCAUGG-GCGCGGGCCGC-CG-------CCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 125305 | 0.69 | 0.32747 |
Target: 5'- cGU-UUCGCGCCgCuGCGGCguuuaGGCGCGCa -3' miRNA: 3'- uCAuGGGCGCGG-GcCGCCG-----CCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 134055 | 0.76 | 0.117241 |
Target: 5'- cGGgcgGCCUagcgaGCGCCCGcGCGGcCGGCGgGCa -3' miRNA: 3'- -UCa--UGGG-----CGCGGGC-CGCC-GCCGCgCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 137777 | 0.7 | 0.273586 |
Target: 5'- cAGUACCUGCGagucauagacacgCUGGCGGCGaUGUGCg -3' miRNA: 3'- -UCAUGGGCGCg------------GGCCGCCGCcGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 160113 | 0.68 | 0.355764 |
Target: 5'- cGGUAcgauCCCGCgagaagGCCCGaCGGCugcaacgcguGGCGCGCc -3' miRNA: 3'- -UCAU----GGGCG------CGGGCcGCCG----------CCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 60209 | 0.68 | 0.393483 |
Target: 5'- --aGCCCauGgGUUCGGCGGCGGCcucGgGCg -3' miRNA: 3'- ucaUGGG--CgCGGGCCGCCGCCG---CgCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 124576 | 0.73 | 0.175587 |
Target: 5'- cGUA-CCGCGCCgaGGCccGCGGUGCGCg -3' miRNA: 3'- uCAUgGGCGCGGg-CCGc-CGCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 4187 | 0.72 | 0.215528 |
Target: 5'- gAGU-CCUGCGCUCgcacaggcagcugGGCGGCGGUGCu- -3' miRNA: 3'- -UCAuGGGCGCGGG-------------CCGCCGCCGCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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