miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9766 3' -66.4 NC_002577.1 + 1380 0.69 0.325416
Target:  5'- gAGcGCCCGCGUgcgcgaugaagccgCCGucuccCGGCGGCGaCGCa -3'
miRNA:   3'- -UCaUGGGCGCG--------------GGCc----GCCGCCGC-GCG- -5'
9766 3' -66.4 NC_002577.1 + 4187 0.72 0.215528
Target:  5'- gAGU-CCUGCGCUCgcacaggcagcugGGCGGCGGUGCu- -3'
miRNA:   3'- -UCAuGGGCGCGGG-------------CCGCCGCCGCGcg -5'
9766 3' -66.4 NC_002577.1 + 4614 0.68 0.363101
Target:  5'- gGGUACgCGCGCCgaguaUGG-GG-GGCGCGUg -3'
miRNA:   3'- -UCAUGgGCGCGG-----GCCgCCgCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 4834 0.67 0.450446
Target:  5'- aAGUACUgCGCGCaaGGaccgaGGCGGCGUu- -3'
miRNA:   3'- -UCAUGG-GCGCGggCCg----CCGCCGCGcg -5'
9766 3' -66.4 NC_002577.1 + 5036 0.67 0.450446
Target:  5'- --cGCgCCGUGUCCccccuCGGCGGUGUGCa -3'
miRNA:   3'- ucaUG-GGCGCGGGcc---GCCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 7941 0.71 0.23642
Target:  5'- aAGUACCgGCGuuCCgGGCGGuCGGCGagucgGCg -3'
miRNA:   3'- -UCAUGGgCGC--GGgCCGCC-GCCGCg----CG- -5'
9766 3' -66.4 NC_002577.1 + 8138 0.66 0.476209
Target:  5'- -cUGCCCGCGCCCG-CG-CucCGCGCu -3'
miRNA:   3'- ucAUGGGCGCGGGCcGCcGccGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 8309 0.69 0.32747
Target:  5'- cGU-UUCGCGCCgCuGCGGCguuuaGGCGCGCa -3'
miRNA:   3'- uCAuGGGCGCGG-GcCGCCG-----CCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 9038 0.73 0.175587
Target:  5'- cGUA-CCGCGCCgaGGCccGCGGUGCGCg -3'
miRNA:   3'- uCAUgGGCGCGGg-CCGc-CGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 10946 0.67 0.401332
Target:  5'- cGGU-CCCGCGCUuuCGGaCGGCGG-GCcgGCc -3'
miRNA:   3'- -UCAuGGGCGCGG--GCC-GCCGCCgCG--CG- -5'
9766 3' -66.4 NC_002577.1 + 11267 0.72 0.206394
Target:  5'- cGUGuuCGUGUCCGGCcGCGGCccGCGCc -3'
miRNA:   3'- uCAUggGCGCGGGCCGcCGCCG--CGCG- -5'
9766 3' -66.4 NC_002577.1 + 11853 0.67 0.401332
Target:  5'- ---cUCgGCGUCCGGaGG-GGCGCGCg -3'
miRNA:   3'- ucauGGgCGCGGGCCgCCgCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 12115 0.73 0.171136
Target:  5'- uGUuuUCGCGCUCGGCGcGCcggagcaGGCGCGCg -3'
miRNA:   3'- uCAugGGCGCGGGCCGC-CG-------CCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 18790 0.66 0.506262
Target:  5'- --cACCCGCGCCgUGGacggaacuacgcaucCGGUGGUGCcCg -3'
miRNA:   3'- ucaUGGGCGCGG-GCC---------------GCCGCCGCGcG- -5'
9766 3' -66.4 NC_002577.1 + 38158 0.66 0.458949
Target:  5'- --cGCCCGCGCCagaGGCcaauugaacucGGCgccGGCauGCGCu -3'
miRNA:   3'- ucaUGGGCGCGGg--CCG-----------CCG---CCG--CGCG- -5'
9766 3' -66.4 NC_002577.1 + 38542 0.67 0.433702
Target:  5'- --cAUuuGuCGCCCGGCGGgcCGGCGaCGa -3'
miRNA:   3'- ucaUGggC-GCGGGCCGCC--GCCGC-GCg -5'
9766 3' -66.4 NC_002577.1 + 55403 0.67 0.425467
Target:  5'- --cGCCC-CGUCCGGaaaauacgaaCGG-GGCGCGCu -3'
miRNA:   3'- ucaUGGGcGCGGGCC----------GCCgCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 58373 0.67 0.417326
Target:  5'- -aUAUCCGCGCCUGcauCGuCGGCGCGa -3'
miRNA:   3'- ucAUGGGCGCGGGCc--GCcGCCGCGCg -5'
9766 3' -66.4 NC_002577.1 + 60209 0.68 0.393483
Target:  5'- --aGCCCauGgGUUCGGCGGCGGCcucGgGCg -3'
miRNA:   3'- ucaUGGG--CgCGGGCCGCCGCCG---CgCG- -5'
9766 3' -66.4 NC_002577.1 + 62213 0.66 0.476209
Target:  5'- uGGUcCCCuaUGCCaggaCGGCGaCGGCGCGCc -3'
miRNA:   3'- -UCAuGGGc-GCGG----GCCGCcGCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.