miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9766 3' -66.4 NC_002577.1 + 139346 1.1 0.000337
Target:  5'- gAGUACCCGCGCCCGGCGGCGGCGCGCa -3'
miRNA:   3'- -UCAUGGGCGCGGGCCGCCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 157992 1.1 0.000337
Target:  5'- gAGUACCCGCGCCCGGCGGCGGCGCGCa -3'
miRNA:   3'- -UCAUGGGCGCGGGCCGCCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 121582 0.82 0.04241
Target:  5'- uGUACCgCGCGCUCGGCGcGCcggagcaGGCGCGCg -3'
miRNA:   3'- uCAUGG-GCGCGGGCCGC-CG-------CCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 163273 0.76 0.117241
Target:  5'- cGGgcgGCCUagcgaGCGCCCGcGCGGcCGGCGgGCa -3'
miRNA:   3'- -UCa--UGGG-----CGCGGGC-CGCC-GCCGCgCG- -5'
9766 3' -66.4 NC_002577.1 + 134055 0.76 0.117241
Target:  5'- cGGgcgGCCUagcgaGCGCCCGcGCGGcCGGCGgGCa -3'
miRNA:   3'- -UCa--UGGG-----CGCGGGC-CGCC-GCCGCgCG- -5'
9766 3' -66.4 NC_002577.1 + 12115 0.73 0.171136
Target:  5'- uGUuuUCGCGCUCGGCGcGCcggagcaGGCGCGCg -3'
miRNA:   3'- uCAugGGCGCGGGCCGC-CG-------CCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 124576 0.73 0.175587
Target:  5'- cGUA-CCGCGCCgaGGCccGCGGUGCGCg -3'
miRNA:   3'- uCAUgGGCGCGGg-CCGc-CGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 9038 0.73 0.175587
Target:  5'- cGUA-CCGCGCCgaGGCccGCGGUGCGCg -3'
miRNA:   3'- uCAUgGGCGCGGg-CCGc-CGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 128999 0.72 0.206394
Target:  5'- gGGUACgCGCGCCgaguaUGGgGG-GGCGCGUg -3'
miRNA:   3'- -UCAUGgGCGCGG-----GCCgCCgCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 122347 0.72 0.206394
Target:  5'- cGUGuuCGUGUCCGGCcGCGGCccGCGCc -3'
miRNA:   3'- uCAUggGCGCGGGCCGcCGCCG--CGCG- -5'
9766 3' -66.4 NC_002577.1 + 11267 0.72 0.206394
Target:  5'- cGUGuuCGUGUCCGGCcGCGGCccGCGCc -3'
miRNA:   3'- uCAUggGCGCGGGCCGcCGCCG--CGCG- -5'
9766 3' -66.4 NC_002577.1 + 4187 0.72 0.215528
Target:  5'- gAGU-CCUGCGCUCgcacaggcagcugGGCGGCGGUGCu- -3'
miRNA:   3'- -UCAuGGGCGCGGG-------------CCGCCGCCGCGcg -5'
9766 3' -66.4 NC_002577.1 + 129426 0.72 0.215528
Target:  5'- gAGU-CCUGCGCUCgcacaggcagcugGGCGGCGGUGCu- -3'
miRNA:   3'- -UCAuGGGCGCGGG-------------CCGCCGCCGCGcg -5'
9766 3' -66.4 NC_002577.1 + 152799 0.71 0.223992
Target:  5'- --gGCCCGCGCUgcaguucaccgagCGuGCGGCGGCaauuuccaggaccuGCGCg -3'
miRNA:   3'- ucaUGGGCGCGG-------------GC-CGCCGCCG--------------CGCG- -5'
9766 3' -66.4 NC_002577.1 + 138766 0.71 0.226024
Target:  5'- aGGUGUCUgaaucggcguaGCGCCgCGGCggugacGGCGGCGCGCc -3'
miRNA:   3'- -UCAUGGG-----------CGCGG-GCCG------CCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 158571 0.71 0.226024
Target:  5'- aGGUGUCUgaaucggcguaGCGCCgCGGCggugacGGCGGCGCGCc -3'
miRNA:   3'- -UCAUGGG-----------CGCGG-GCCG------CCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 7941 0.71 0.23642
Target:  5'- aAGUACCgGCGuuCCgGGCGGuCGGCGagucgGCg -3'
miRNA:   3'- -UCAUGGgCGC--GGgCCGCC-GCCGCg----CG- -5'
9766 3' -66.4 NC_002577.1 + 125673 0.71 0.23642
Target:  5'- aAGUACCgGCGuuCCgGGCGGuCGGCGagucgGCg -3'
miRNA:   3'- -UCAUGGgCGC--GGgCCGCC-GCCGCg----CG- -5'
9766 3' -66.4 NC_002577.1 + 137777 0.7 0.273586
Target:  5'- cAGUACCUGCGagucauagacacgCUGGCGGCGaUGUGCg -3'
miRNA:   3'- -UCAUGGGCGCg------------GGCCGCCGCcGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 159560 0.7 0.273586
Target:  5'- cAGUACCUGCGagucauagacacgCUGGCGGCGaUGUGCg -3'
miRNA:   3'- -UCAUGGGCGCg------------GGCCGCCGCcGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.