Results 21 - 40 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 125233 | 0.68 | 0.893737 |
Target: 5'- cCGCCGUUCGccCGGCCG--AG-CGCc -3' miRNA: 3'- uGCGGUAAGCuuGCCGGCcaUCaGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 22827 | 0.66 | 0.943567 |
Target: 5'- cCGCCcuaaaacaaAUUCG-ACGGCCGc-AGUUGCa -3' miRNA: 3'- uGCGG---------UAAGCuUGCCGGCcaUCAGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 128813 | 0.67 | 0.929069 |
Target: 5'- aACGUCGgacgGGACGGCgCGGcgucGUCGCg -3' miRNA: 3'- -UGCGGUaag-CUUGCCG-GCCau--CAGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 56558 | 0.68 | 0.893737 |
Target: 5'- uACGCaCGcUCGAGaCGGCCGcUAGUCa- -3' miRNA: 3'- -UGCG-GUaAGCUU-GCCGGCcAUCAGcg -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 39998 | 0.67 | 0.938968 |
Target: 5'- uGCGCCAgaggGAACGuaggcuGCCGGUGauUCGCg -3' miRNA: 3'- -UGCGGUaag-CUUGC------CGGCCAUc-AGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 121948 | 0.66 | 0.947933 |
Target: 5'- gGCGCCGUcCGAgGCcGCCGGggaggaGGUUGUg -3' miRNA: 3'- -UGCGGUAaGCU-UGcCGGCCa-----UCAGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 18794 | 0.66 | 0.943567 |
Target: 5'- cGCGCCG--UGGACGGaacuacgcauCCGGUGGU-GCc -3' miRNA: 3'- -UGCGGUaaGCUUGCC----------GGCCAUCAgCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 11739 | 0.68 | 0.887043 |
Target: 5'- gACGCCGgagaGAACGacGCCGGaGGgCGCg -3' miRNA: 3'- -UGCGGUaag-CUUGC--CGGCCaUCaGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 157287 | 0.69 | 0.842389 |
Target: 5'- -gGCCGUUCGAAUGGCguugCGcGaaaGGUCGCc -3' miRNA: 3'- ugCGGUAAGCUUGCCG----GC-Ca--UCAGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 38471 | 0.68 | 0.906445 |
Target: 5'- gGCGuCCuaguagCGAcgGGuuGGUAGUCGCc -3' miRNA: 3'- -UGC-GGuaa---GCUugCCggCCAUCAGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 122864 | 0.67 | 0.912452 |
Target: 5'- aACGCCGcUCGcggaacACGGUCGcgGGUCGCc -3' miRNA: 3'- -UGCGGUaAGCu-----UGCCGGCcaUCAGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 137632 | 0.67 | 0.934136 |
Target: 5'- -gGCCGc-UGAACGaGCUGGUGGaCGCu -3' miRNA: 3'- ugCGGUaaGCUUGC-CGGCCAUCaGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 3615 | 0.75 | 0.543702 |
Target: 5'- -aGCCGggcgCGaAGCGGCUGGgaucgGGUCGCg -3' miRNA: 3'- ugCGGUaa--GC-UUGCCGGCCa----UCAGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 4323 | 0.74 | 0.593771 |
Target: 5'- cCGCCGUUCGGAUGGUCcGUGGUaCGg -3' miRNA: 3'- uGCGGUAAGCUUGCCGGcCAUCA-GCg -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 136315 | 0.73 | 0.64452 |
Target: 5'- aGCGCCGccUGGGCgGGCCGGUGGagaGCg -3' miRNA: 3'- -UGCGGUaaGCUUG-CCGGCCAUCag-CG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 53698 | 0.73 | 0.64452 |
Target: 5'- cGCGCCGgacaugUCGGacguGCGGCCG-UGGUCGg -3' miRNA: 3'- -UGCGGUa-----AGCU----UGCCGGCcAUCAGCg -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 105156 | 0.73 | 0.674913 |
Target: 5'- gACGCUcUUCGGAUcguucaGGCCGGgaugcGUCGCg -3' miRNA: 3'- -UGCGGuAAGCUUG------CCGGCCau---CAGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 82166 | 0.67 | 0.923765 |
Target: 5'- -aGCCGUUCaAGCGGgCGGguggauUAGUCGa -3' miRNA: 3'- ugCGGUAAGcUUGCCgGCC------AUCAGCg -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 4996 | 0.67 | 0.917659 |
Target: 5'- gGCGCCGUccucaugccccccUCcGAgGGUagcacgCGGUGGUCGCu -3' miRNA: 3'- -UGCGGUA-------------AGcUUgCCG------GCCAUCAGCG- -5' |
|||||||
9767 | 3' | -54.9 | NC_002577.1 | + | 10749 | 0.67 | 0.912452 |
Target: 5'- aACGCCGcUCGcggaacACGGUCGcgGGUCGCc -3' miRNA: 3'- -UGCGGUaAGCu-----UGCCGGCcaUCAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home