miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9767 3' -54.9 NC_002577.1 + 139870 1.11 0.003208
Target:  5'- aACGCCAUUCGAACGGCCGGUAGUCGCu -3'
miRNA:   3'- -UGCGGUAAGCUUGCCGGCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 128618 0.67 0.917659
Target:  5'- gGCGCCGUccucaugccccccUCcGAgGGUagcacgCGGUGGUCGCu -3'
miRNA:   3'- -UGCGGUA-------------AGcUUgCCG------GCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 128813 0.67 0.929069
Target:  5'- aACGUCGgacgGGACGGCgCGGcgucGUCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGCCG-GCCau--CAGCG- -5'
9767 3' -54.9 NC_002577.1 + 148140 0.66 0.95598
Target:  5'- cCGCCcagcUCGGAgGGCCGcGUAuUCGUc -3'
miRNA:   3'- uGCGGua--AGCUUgCCGGC-CAUcAGCG- -5'
9767 3' -54.9 NC_002577.1 + 137454 0.71 0.753799
Target:  5'- -aGCuCGUUC-AGCGGCCGgGUAGaCGCg -3'
miRNA:   3'- ugCG-GUAAGcUUGCCGGC-CAUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 130549 0.71 0.772643
Target:  5'- gGCGUUGUUCGu-CGGCCgagGGUAGgCGCa -3'
miRNA:   3'- -UGCGGUAAGCuuGCCGG---CCAUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 52271 0.7 0.817437
Target:  5'- cCGCCAUUcCGAuuacGCGGCguCGGUcGUUGCc -3'
miRNA:   3'- uGCGGUAA-GCU----UGCCG--GCCAuCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 134915 0.7 0.817437
Target:  5'- uGCGCUAc-UGAAUGGCCGGgcgaaGGUgCGCg -3'
miRNA:   3'- -UGCGGUaaGCUUGCCGGCCa----UCA-GCG- -5'
9767 3' -54.9 NC_002577.1 + 11739 0.68 0.887043
Target:  5'- gACGCCGgagaGAACGacGCCGGaGGgCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGC--CGGCCaUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 122864 0.67 0.912452
Target:  5'- aACGCCGcUCGcggaacACGGUCGcgGGUCGCc -3'
miRNA:   3'- -UGCGGUaAGCu-----UGCCGGCcaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 125233 0.68 0.893737
Target:  5'- cCGCCGUUCGccCGGCCG--AG-CGCc -3'
miRNA:   3'- uGCGGUAAGCuuGCCGGCcaUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 157287 0.69 0.842389
Target:  5'- -gGCCGUUCGAAUGGCguugCGcGaaaGGUCGCc -3'
miRNA:   3'- ugCGGUAAGCUUGCCG----GC-Ca--UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 129998 0.74 0.593771
Target:  5'- -aGCCGggcgCGaAGCGGCUGGgaaucgGGUCGCg -3'
miRNA:   3'- ugCGGUaa--GC-UUGCCGGCCa-----UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 38471 0.68 0.906445
Target:  5'- gGCGuCCuaguagCGAcgGGuuGGUAGUCGCc -3'
miRNA:   3'- -UGC-GGuaa---GCUugCCggCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 129291 0.74 0.593771
Target:  5'- cCGCCGUUCGGAUGGUCcGUGGUaCGg -3'
miRNA:   3'- uGCGGUAAGCUUGCCGGcCAUCA-GCg -5'
9767 3' -54.9 NC_002577.1 + 138982 0.7 0.825088
Target:  5'- aGCGCCAacUUCGAuucccugACGGCCGcGgaaAG-CGCg -3'
miRNA:   3'- -UGCGGU--AAGCU-------UGCCGGC-Ca--UCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 122624 0.68 0.906445
Target:  5'- cGCGCCGUcccgagaacgUCGucuACGGCucgcguucgCGGgGGUCGCc -3'
miRNA:   3'- -UGCGGUA----------AGCu--UGCCG---------GCCaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 4874 0.67 0.929069
Target:  5'- cGCGCCGa-UGcuCGGCCGGUucuUCGCc -3'
miRNA:   3'- -UGCGGUaaGCuuGCCGGCCAuc-AGCG- -5'
9767 3' -54.9 NC_002577.1 + 161023 0.73 0.644519
Target:  5'- aGCGCCGccUGGGCgGGCCGGUGGagaGCg -3'
miRNA:   3'- -UGCGGUaaGCUUG-CCGGCCAUCag-CG- -5'
9767 3' -54.9 NC_002577.1 + 125678 0.7 0.799959
Target:  5'- cCGgCGUUcCGGGCGGUCGGcgAGUCGg -3'
miRNA:   3'- uGCgGUAA-GCUUGCCGGCCa-UCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.