miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9767 3' -54.9 NC_002577.1 + 11836 0.66 0.955981
Target:  5'- cGCGCgGaUC-AGCGGUCGG--GUCGCg -3'
miRNA:   3'- -UGCGgUaAGcUUGCCGGCCauCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 121777 0.66 0.95598
Target:  5'- cGCGCgGaUC-AGCGGUCGG--GUCGCg -3'
miRNA:   3'- -UGCGgUaAGcUUGCCGGCCauCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 148140 0.66 0.95598
Target:  5'- cCGCCcagcUCGGAgGGCCGcGUAuUCGUc -3'
miRNA:   3'- uGCGGua--AGCUUgCCGGC-CAUcAGCG- -5'
9767 3' -54.9 NC_002577.1 + 18794 0.66 0.943567
Target:  5'- cGCGCCG--UGGACGGaacuacgcauCCGGUGGU-GCc -3'
miRNA:   3'- -UGCGGUaaGCUUGCC----------GGCCAUCAgCG- -5'
9767 3' -54.9 NC_002577.1 + 121948 0.66 0.947933
Target:  5'- gGCGCCGUcCGAgGCcGCCGGggaggaGGUUGUg -3'
miRNA:   3'- -UGCGGUAaGCU-UGcCGGCCa-----UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 22827 0.66 0.943567
Target:  5'- cCGCCcuaaaacaaAUUCG-ACGGCCGc-AGUUGCa -3'
miRNA:   3'- uGCGG---------UAAGCuUGCCGGCcaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 11665 0.66 0.947934
Target:  5'- gGCGCCGUcCGAgGCcGCCGGggaggaGGUUGUg -3'
miRNA:   3'- -UGCGGUAaGCU-UGcCGGCCa-----UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 100313 0.66 0.947507
Target:  5'- gACGCUuccguuaaacucuGUUCGugcgUGGCUGG-GGUCGCg -3'
miRNA:   3'- -UGCGG-------------UAAGCuu--GCCGGCCaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 136286 0.67 0.934136
Target:  5'- gGCGCCGgacguUUCGGcgcugaccGCGGCCGGc-GUCa- -3'
miRNA:   3'- -UGCGGU-----AAGCU--------UGCCGGCCauCAGcg -5'
9767 3' -54.9 NC_002577.1 + 122864 0.67 0.912452
Target:  5'- aACGCCGcUCGcggaacACGGUCGcgGGUCGCc -3'
miRNA:   3'- -UGCGGUaAGCu-----UGCCGGCcaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 128813 0.67 0.929069
Target:  5'- aACGUCGgacgGGACGGCgCGGcgucGUCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGCCG-GCCau--CAGCG- -5'
9767 3' -54.9 NC_002577.1 + 4874 0.67 0.929069
Target:  5'- cGCGCCGa-UGcuCGGCCGGUucuUCGCc -3'
miRNA:   3'- -UGCGGUaaGCuuGCCGGCCAuc-AGCG- -5'
9767 3' -54.9 NC_002577.1 + 10749 0.67 0.912452
Target:  5'- aACGCCGcUCGcggaacACGGUCGcgGGUCGCc -3'
miRNA:   3'- -UGCGGUaAGCu-----UGCCGGCcaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 4996 0.67 0.917659
Target:  5'- gGCGCCGUccucaugccccccUCcGAgGGUagcacgCGGUGGUCGCu -3'
miRNA:   3'- -UGCGGUA-------------AGcUUgCCG------GCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 82166 0.67 0.923765
Target:  5'- -aGCCGUUCaAGCGGgCGGguggauUAGUCGa -3'
miRNA:   3'- ugCGGUAAGcUUGCCgGCC------AUCAGCg -5'
9767 3' -54.9 NC_002577.1 + 128740 0.67 0.929069
Target:  5'- cGCGCCGa-UGcuCGGCCGGUucuUCGCc -3'
miRNA:   3'- -UGCGGUaaGCuuGCCGGCCAuc-AGCG- -5'
9767 3' -54.9 NC_002577.1 + 123053 0.67 0.938969
Target:  5'- cGCGaCCGUguuccgCGAGCGGCguuCGGccgcGUCGCc -3'
miRNA:   3'- -UGC-GGUAa-----GCUUGCCG---GCCau--CAGCG- -5'
9767 3' -54.9 NC_002577.1 + 37350 0.67 0.929069
Target:  5'- aAUGCCGUcCGAGUGGUCGGUAauaGCg -3'
miRNA:   3'- -UGCGGUAaGCUUGCCGGCCAUcagCG- -5'
9767 3' -54.9 NC_002577.1 + 137577 0.67 0.93364
Target:  5'- gGCGCUucugCGcggacccGACGGuCCGGgcgcGGUCGCg -3'
miRNA:   3'- -UGCGGuaa-GC-------UUGCC-GGCCa---UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 137632 0.67 0.934136
Target:  5'- -gGCCGc-UGAACGaGCUGGUGGaCGCu -3'
miRNA:   3'- ugCGGUaaGCUUGC-CGGCCAUCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.