miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9767 3' -54.9 NC_002577.1 + 139870 1.11 0.003208
Target:  5'- aACGCCAUUCGAACGGCCGGUAGUCGCu -3'
miRNA:   3'- -UGCGGUAAGCUUGCCGGCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 157467 1.11 0.003208
Target:  5'- aACGCCAUUCGAACGGCCGGUAGUCGCu -3'
miRNA:   3'- -UGCGGUAAGCUUGCCGGCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 3615 0.75 0.543702
Target:  5'- -aGCCGggcgCGaAGCGGCUGGgaucgGGUCGCg -3'
miRNA:   3'- ugCGGUaa--GC-UUGCCGGCCa----UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 4323 0.74 0.593771
Target:  5'- cCGCCGUUCGGAUGGUCcGUGGUaCGg -3'
miRNA:   3'- uGCGGUAAGCUUGCCGGcCAUCA-GCg -5'
9767 3' -54.9 NC_002577.1 + 129291 0.74 0.593771
Target:  5'- cCGCCGUUCGGAUGGUCcGUGGUaCGg -3'
miRNA:   3'- uGCGGUAAGCUUGCCGGcCAUCA-GCg -5'
9767 3' -54.9 NC_002577.1 + 129998 0.74 0.593771
Target:  5'- -aGCCGggcgCGaAGCGGCUGGgaaucgGGUCGCg -3'
miRNA:   3'- ugCGGUaa--GC-UUGCCGGCCa-----UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 161023 0.73 0.644519
Target:  5'- aGCGCCGccUGGGCgGGCCGGUGGagaGCg -3'
miRNA:   3'- -UGCGGUaaGCUUG-CCGGCCAUCag-CG- -5'
9767 3' -54.9 NC_002577.1 + 136315 0.73 0.64452
Target:  5'- aGCGCCGccUGGGCgGGCCGGUGGagaGCg -3'
miRNA:   3'- -UGCGGUaaGCUUG-CCGGCCAUCag-CG- -5'
9767 3' -54.9 NC_002577.1 + 53698 0.73 0.64452
Target:  5'- cGCGCCGgacaugUCGGacguGCGGCCG-UGGUCGg -3'
miRNA:   3'- -UGCGGUa-----AGCU----UGCCGGCcAUCAGCg -5'
9767 3' -54.9 NC_002577.1 + 105156 0.73 0.674913
Target:  5'- gACGCUcUUCGGAUcguucaGGCCGGgaugcGUCGCg -3'
miRNA:   3'- -UGCGGuAAGCUUG------CCGGCCau---CAGCG- -5'
9767 3' -54.9 NC_002577.1 + 137454 0.71 0.753799
Target:  5'- -aGCuCGUUC-AGCGGCCGgGUAGaCGCg -3'
miRNA:   3'- ugCG-GUAAGcUUGCCGGC-CAUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 159884 0.71 0.753799
Target:  5'- -aGCuCGUUC-AGCGGCCGgGUAGaCGCg -3'
miRNA:   3'- ugCG-GUAAGcUUGCCGGC-CAUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 130549 0.71 0.772643
Target:  5'- gGCGUUGUUCGu-CGGCCgagGGUAGgCGCa -3'
miRNA:   3'- -UGCGGUAAGCuuGCCGG---CCAUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 3065 0.71 0.772643
Target:  5'- gGCGUUGUUCGu-CGGCCgagGGUAGgCGCa -3'
miRNA:   3'- -UGCGGUAAGCuuGCCGG---CCAUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 125678 0.7 0.799959
Target:  5'- cCGgCGUUcCGGGCGGUCGGcgAGUCGg -3'
miRNA:   3'- uGCgGUAA-GCUUGCCGGCCa-UCAGCg -5'
9767 3' -54.9 NC_002577.1 + 7936 0.7 0.79996
Target:  5'- cCGgCGUUcCGGGCGGUCGGcgAGUCGg -3'
miRNA:   3'- uGCgGUAA-GCUUGCCGGCCa-UCAGCg -5'
9767 3' -54.9 NC_002577.1 + 134915 0.7 0.817437
Target:  5'- uGCGCUAc-UGAAUGGCCGGgcgaaGGUgCGCg -3'
miRNA:   3'- -UGCGGUaaGCUUGCCGGCCa----UCA-GCG- -5'
9767 3' -54.9 NC_002577.1 + 52271 0.7 0.817437
Target:  5'- cCGCCAUUcCGAuuacGCGGCguCGGUcGUUGCc -3'
miRNA:   3'- uGCGGUAA-GCU----UGCCG--GCCAuCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 162412 0.7 0.817437
Target:  5'- uGCGCUAc-UGAAUGGCCGGgcgaaGGUgCGCg -3'
miRNA:   3'- -UGCGGUaaGCUUGCCGGCCa----UCA-GCG- -5'
9767 3' -54.9 NC_002577.1 + 138982 0.7 0.825088
Target:  5'- aGCGCCAacUUCGAuucccugACGGCCGcGgaaAG-CGCg -3'
miRNA:   3'- -UGCGGU--AAGCU-------UGCCGGC-Ca--UCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.