miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9767 3' -54.9 NC_002577.1 + 3065 0.71 0.772643
Target:  5'- gGCGUUGUUCGu-CGGCCgagGGUAGgCGCa -3'
miRNA:   3'- -UGCGGUAAGCuuGCCGG---CCAUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 3615 0.75 0.543702
Target:  5'- -aGCCGggcgCGaAGCGGCUGGgaucgGGUCGCg -3'
miRNA:   3'- ugCGGUaa--GC-UUGCCGGCCa----UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 4323 0.74 0.593771
Target:  5'- cCGCCGUUCGGAUGGUCcGUGGUaCGg -3'
miRNA:   3'- uGCGGUAAGCUUGCCGGcCAUCA-GCg -5'
9767 3' -54.9 NC_002577.1 + 4800 0.67 0.929069
Target:  5'- aACGUCGgacgGGACGGCgCGGcgucGUCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGCCG-GCCau--CAGCG- -5'
9767 3' -54.9 NC_002577.1 + 4874 0.67 0.929069
Target:  5'- cGCGCCGa-UGcuCGGCCGGUucuUCGCc -3'
miRNA:   3'- -UGCGGUaaGCuuGCCGGCCAuc-AGCG- -5'
9767 3' -54.9 NC_002577.1 + 4996 0.67 0.917659
Target:  5'- gGCGCCGUccucaugccccccUCcGAgGGUagcacgCGGUGGUCGCu -3'
miRNA:   3'- -UGCGGUA-------------AGcUUgCCG------GCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 6951 0.67 0.938969
Target:  5'- uCGCgGUcCGAuauccccguuUGGCCGGUggaugAGUCGCg -3'
miRNA:   3'- uGCGgUAaGCUu---------GCCGGCCA-----UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 7936 0.7 0.79996
Target:  5'- cCGgCGUUcCGGGCGGUCGGcgAGUCGg -3'
miRNA:   3'- uGCgGUAA-GCUUGCCGGCCa-UCAGCg -5'
9767 3' -54.9 NC_002577.1 + 8381 0.68 0.893737
Target:  5'- cCGCCGUUCGccCGGCCG--AG-CGCc -3'
miRNA:   3'- uGCGGUAAGCuuGCCGGCcaUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 10561 0.67 0.938968
Target:  5'- cGCGaCCGUguuccgCGAGCGGCguuCGGccgcGUCGCc -3'
miRNA:   3'- -UGC-GGUAa-----GCUUGCCG---GCCau--CAGCG- -5'
9767 3' -54.9 NC_002577.1 + 10749 0.67 0.912452
Target:  5'- aACGCCGcUCGcggaacACGGUCGcgGGUCGCc -3'
miRNA:   3'- -UGCGGUaAGCu-----UGCCGGCcaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 10990 0.68 0.906445
Target:  5'- cGCGCCGUcccgagaacgUCGucuACGGCucgcguucgCGGgGGUCGCc -3'
miRNA:   3'- -UGCGGUA----------AGCu--UGCCG---------GCCaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 11665 0.66 0.947934
Target:  5'- gGCGCCGUcCGAgGCcGCCGGggaggaGGUUGUg -3'
miRNA:   3'- -UGCGGUAaGCU-UGcCGGCCa-----UCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 11739 0.68 0.887043
Target:  5'- gACGCCGgagaGAACGacGCCGGaGGgCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGC--CGGCCaUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 11836 0.66 0.955981
Target:  5'- cGCGCgGaUC-AGCGGUCGG--GUCGCg -3'
miRNA:   3'- -UGCGgUaAGcUUGCCGGCCauCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 18794 0.66 0.943567
Target:  5'- cGCGCCG--UGGACGGaacuacgcauCCGGUGGU-GCc -3'
miRNA:   3'- -UGCGGUaaGCUUGCC----------GGCCAUCAgCG- -5'
9767 3' -54.9 NC_002577.1 + 22827 0.66 0.943567
Target:  5'- cCGCCcuaaaacaaAUUCG-ACGGCCGc-AGUUGCa -3'
miRNA:   3'- uGCGG---------UAAGCuUGCCGGCcaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 37350 0.67 0.929069
Target:  5'- aAUGCCGUcCGAGUGGUCGGUAauaGCg -3'
miRNA:   3'- -UGCGGUAaGCUUGCCGGCCAUcagCG- -5'
9767 3' -54.9 NC_002577.1 + 38471 0.68 0.906445
Target:  5'- gGCGuCCuaguagCGAcgGGuuGGUAGUCGCc -3'
miRNA:   3'- -UGC-GGuaa---GCUugCCggCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 39998 0.67 0.938968
Target:  5'- uGCGCCAgaggGAACGuaggcuGCCGGUGauUCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGC------CGGCCAUc-AGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.