Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9768 | 5' | -54.8 | NC_002577.1 | + | 134852 | 0.66 | 0.954523 |
Target: 5'- --aCCGGAUCCggaGGAGCGGUuuccgcaGCCCu -3' miRNA: 3'- auaGGCUUGGGaggCUUUGCCG-------UGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 55207 | 0.66 | 0.954912 |
Target: 5'- --aCCGAacGCCaCUcCCGAAuucGCaGCGCCCc -3' miRNA: 3'- auaGGCU--UGG-GA-GGCUU---UGcCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 141352 | 0.66 | 0.958682 |
Target: 5'- --gCCGuGCCC-CCGAcgcccgguCGGCAgCCCg -3' miRNA: 3'- auaGGCuUGGGaGGCUuu------GCCGU-GGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 132232 | 0.66 | 0.958682 |
Target: 5'- --cCCG-ACCCUCaauccGCGGCACgCCc -3' miRNA: 3'- auaGGCuUGGGAGgcuu-UGCCGUG-GG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 139135 | 0.66 | 0.958682 |
Target: 5'- aAUCCgGAACCCggCGGGAC-GC-CCCa -3' miRNA: 3'- aUAGG-CUUGGGagGCUUUGcCGuGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 84249 | 0.66 | 0.946689 |
Target: 5'- cUAUgCGGAuCCCUC---GACGGCGCCa -3' miRNA: 3'- -AUAgGCUU-GGGAGgcuUUGCCGUGGg -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 137370 | 0.66 | 0.946689 |
Target: 5'- ---gCGAACUCUCgCGGcuaauGCGGCgGCCCu -3' miRNA: 3'- auagGCUUGGGAG-GCUu----UGCCG-UGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 122887 | 0.66 | 0.958682 |
Target: 5'- --gCCGAGCUCggccagUUCGAugcccuCGGUACCCa -3' miRNA: 3'- auaGGCUUGGG------AGGCUuu----GCCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 121982 | 0.66 | 0.936081 |
Target: 5'- gAUCCGAcggacgcgaucgcgACCCgaccgCUGAucCGcGCGCCCc -3' miRNA: 3'- aUAGGCU--------------UGGGa----GGCUuuGC-CGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 11138 | 0.66 | 0.937535 |
Target: 5'- --gCCGGcccGCCgUCCGAAagcGCGGgACCg -3' miRNA: 3'- auaGGCU---UGGgAGGCUU---UGCCgUGGg -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 90087 | 0.66 | 0.940846 |
Target: 5'- gGUCC--AUUCUCCGAuAucccacacuacuccCGGCACCCa -3' miRNA: 3'- aUAGGcuUGGGAGGCUuU--------------GCCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 3290 | 0.67 | 0.927433 |
Target: 5'- cGUCCGAugCUcUCGAucucaggcagcACGGCACCg -3' miRNA: 3'- aUAGGCUugGGaGGCUu----------UGCCGUGGg -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 157971 | 0.67 | 0.932603 |
Target: 5'- --cCCGAACCC-CUGGAcCGGgcuCACCUg -3' miRNA: 3'- auaGGCUUGGGaGGCUUuGCC---GUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 11302 | 0.67 | 0.916378 |
Target: 5'- cGUCCGGGCCaaUCGGgaAGCGGgAUCCu -3' miRNA: 3'- aUAGGCUUGGgaGGCU--UUGCCgUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 78976 | 0.67 | 0.927433 |
Target: 5'- uUGUgCGAGCCCUCCGGccuaAGCcugaGGC-CCg -3' miRNA: 3'- -AUAgGCUUGGGAGGCU----UUG----CCGuGGg -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 162658 | 0.67 | 0.916378 |
Target: 5'- --aCCGc-UCCUCCGGAuccgguGCGGC-CCCg -3' miRNA: 3'- auaGGCuuGGGAGGCUU------UGCCGuGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 134670 | 0.67 | 0.916378 |
Target: 5'- --aCCGc-UCCUCCGGAuccgguGCGGC-CCCg -3' miRNA: 3'- auaGGCuuGGGAGGCUU------UGCCGuGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 96832 | 0.67 | 0.916378 |
Target: 5'- cAUCC---CCCUCCGAgaggaccgaaGACGgGCGCCUu -3' miRNA: 3'- aUAGGcuuGGGAGGCU----------UUGC-CGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 15599 | 0.67 | 0.916378 |
Target: 5'- -uUUCGGccuCCCUCCGAuuccuGACGGCGgCa -3' miRNA: 3'- auAGGCUu--GGGAGGCU-----UUGCCGUgGg -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 158407 | 0.67 | 0.932603 |
Target: 5'- -cUCCGucAGCCgUCCGgcGCGagggacgacggaGCGCCCa -3' miRNA: 3'- auAGGC--UUGGgAGGCuuUGC------------CGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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