miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 122887 0.66 0.958682
Target:  5'- --gCCGAGCUCggccagUUCGAugcccuCGGUACCCa -3'
miRNA:   3'- auaGGCUUGGG------AGGCUuu----GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11138 0.66 0.937535
Target:  5'- --gCCGGcccGCCgUCCGAAagcGCGGgACCg -3'
miRNA:   3'- auaGGCU---UGGgAGGCUU---UGCCgUGGg -5'
9768 5' -54.8 NC_002577.1 + 121982 0.66 0.936081
Target:  5'- gAUCCGAcggacgcgaucgcgACCCgaccgCUGAucCGcGCGCCCc -3'
miRNA:   3'- aUAGGCU--------------UGGGa----GGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 139996 0.66 0.936081
Target:  5'- --cCCGuGCCCUCCGAacgagcuggggaauGACugGGCGgCCu -3'
miRNA:   3'- auaGGCuUGGGAGGCU--------------UUG--CCGUgGG- -5'
9768 5' -54.8 NC_002577.1 + 11632 0.66 0.936081
Target:  5'- gAUCCGAcggacgcgaucgcgACCCgaccgCUGAucCGcGCGCCCc -3'
miRNA:   3'- aUAGGCU--------------UGGGa----GGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 157342 0.66 0.936081
Target:  5'- --cCCGuGCCCUCCGAacgagcuggggaauGACugGGCGgCCu -3'
miRNA:   3'- auaGGCuUGGGAGGCU--------------UUG--CCGUgGG- -5'
9768 5' -54.8 NC_002577.1 + 122476 0.66 0.937535
Target:  5'- --gCCGGcccGCCgUCCGAAagcGCGGgACCg -3'
miRNA:   3'- auaGGCU---UGGgAGGCUU---UGCCgUGGg -5'
9768 5' -54.8 NC_002577.1 + 26126 0.66 0.94223
Target:  5'- gGUCaCGAGCUCUUCGAAcACuGCACgCg -3'
miRNA:   3'- aUAG-GCUUGGGAGGCUU-UGcCGUGgG- -5'
9768 5' -54.8 NC_002577.1 + 104819 0.66 0.94223
Target:  5'- cAUUCGAGCCUaUCGAAGacCGGCcagaACCCc -3'
miRNA:   3'- aUAGGCUUGGGaGGCUUU--GCCG----UGGG- -5'
9768 5' -54.8 NC_002577.1 + 90087 0.66 0.940846
Target:  5'- gGUCC--AUUCUCCGAuAucccacacuacuccCGGCACCCa -3'
miRNA:   3'- aUAGGcuUGGGAGGCUuU--------------GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 137370 0.66 0.946689
Target:  5'- ---gCGAACUCUCgCGGcuaauGCGGCgGCCCu -3'
miRNA:   3'- auagGCUUGGGAG-GCUu----UGCCG-UGGG- -5'
9768 5' -54.8 NC_002577.1 + 84249 0.66 0.946689
Target:  5'- cUAUgCGGAuCCCUC---GACGGCGCCa -3'
miRNA:   3'- -AUAgGCUU-GGGAGgcuUUGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 139135 0.66 0.958682
Target:  5'- aAUCCgGAACCCggCGGGAC-GC-CCCa -3'
miRNA:   3'- aUAGG-CUUGGGagGCUUUGcCGuGGG- -5'
9768 5' -54.8 NC_002577.1 + 132232 0.66 0.958682
Target:  5'- --cCCG-ACCCUCaauccGCGGCACgCCc -3'
miRNA:   3'- auaGGCuUGGGAGgcuu-UGCCGUG-GG- -5'
9768 5' -54.8 NC_002577.1 + 141352 0.66 0.958682
Target:  5'- --gCCGuGCCC-CCGAcgcccgguCGGCAgCCCg -3'
miRNA:   3'- auaGGCuUGGGaGGCUuu------GCCGU-GGG- -5'
9768 5' -54.8 NC_002577.1 + 55207 0.66 0.954912
Target:  5'- --aCCGAacGCCaCUcCCGAAuucGCaGCGCCCc -3'
miRNA:   3'- auaGGCU--UGG-GA-GGCUU---UGcCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 134852 0.66 0.954523
Target:  5'- --aCCGGAUCCggaGGAGCGGUuuccgcaGCCCu -3'
miRNA:   3'- auaGGCUUGGGaggCUUUGCCG-------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 157414 0.66 0.950916
Target:  5'- aGUUCGAuagACCCcggugaggUCCGcAGAgGGCugCCg -3'
miRNA:   3'- aUAGGCU---UGGG--------AGGC-UUUgCCGugGG- -5'
9768 5' -54.8 NC_002577.1 + 7278 0.66 0.950504
Target:  5'- cGUCCgccacggaagcugGAACCCcaUCgGAcgucuCGGCGCCCu -3'
miRNA:   3'- aUAGG-------------CUUGGG--AGgCUuu---GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 74324 0.66 0.946689
Target:  5'- -cUCC--GCCCUCUcaAAACGGC-CCCa -3'
miRNA:   3'- auAGGcuUGGGAGGc-UUUGCCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.