miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 367 0.68 0.898021
Target:  5'- --cCCGAgagGCCCUaaccgccaCCGuAAACGGCccugGCCCa -3'
miRNA:   3'- auaGGCU---UGGGA--------GGC-UUUGCCG----UGGG- -5'
9768 5' -54.8 NC_002577.1 + 1382 0.66 0.958682
Target:  5'- --cCCG-ACCCUCaauccGCGGCACgCCc -3'
miRNA:   3'- auaGGCuUGGGAGgcuu-UGCCGUG-GG- -5'
9768 5' -54.8 NC_002577.1 + 3154 0.76 0.470566
Target:  5'- cGUCUGGACUUUaCCGggGCGGCuucguCCCg -3'
miRNA:   3'- aUAGGCUUGGGA-GGCuuUGCCGu----GGG- -5'
9768 5' -54.8 NC_002577.1 + 3216 0.69 0.83926
Target:  5'- -cUCC--AUCCUUCGguGCGGUGCCCg -3'
miRNA:   3'- auAGGcuUGGGAGGCuuUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 3290 0.67 0.927433
Target:  5'- cGUCCGAugCUcUCGAucucaggcagcACGGCACCg -3'
miRNA:   3'- aUAGGCUugGGaGGCUu----------UGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 3510 0.7 0.822566
Target:  5'- cGUgCGAcgcGCUCUCCGGAuCGGUGCCg -3'
miRNA:   3'- aUAgGCU---UGGGAGGCUUuGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 4794 0.74 0.598531
Target:  5'- --aCCGcgugcuACCCUCgGAggggggcaugagGACGGCGCCCg -3'
miRNA:   3'- auaGGCu-----UGGGAGgCU------------UUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 5412 0.68 0.898021
Target:  5'- gGUCCGAGCggcucuCCUCUGAuauccCGGCACggCCu -3'
miRNA:   3'- aUAGGCUUG------GGAGGCUuu---GCCGUG--GG- -5'
9768 5' -54.8 NC_002577.1 + 6594 0.68 0.903122
Target:  5'- --cCCGAcgucuCCCUCCGAuucaaaaguacuGCGGCACgaCCu -3'
miRNA:   3'- auaGGCUu----GGGAGGCUu-----------UGCCGUG--GG- -5'
9768 5' -54.8 NC_002577.1 + 7278 0.66 0.950504
Target:  5'- cGUCCgccacggaagcugGAACCCcaUCgGAcgucuCGGCGCCCu -3'
miRNA:   3'- aUAGG-------------CUUGGG--AGgCUuu---GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 10563 0.68 0.904374
Target:  5'- gGUCCGuuucuGCCCUU----GCGGCGCUCu -3'
miRNA:   3'- aUAGGCu----UGGGAGgcuuUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 10727 0.66 0.958682
Target:  5'- --gCCGAGCUCggccagUUCGAugcccuCGGUACCCa -3'
miRNA:   3'- auaGGCUUGGG------AGGCUuu----GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11138 0.66 0.937535
Target:  5'- --gCCGGcccGCCgUCCGAAagcGCGGgACCg -3'
miRNA:   3'- auaGGCU---UGGgAGGCUU---UGCCgUGGg -5'
9768 5' -54.8 NC_002577.1 + 11302 0.67 0.916378
Target:  5'- cGUCCGGGCCaaUCGGgaAGCGGgAUCCu -3'
miRNA:   3'- aUAGGCUUGGgaGGCU--UUGCCgUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11632 0.66 0.936081
Target:  5'- gAUCCGAcggacgcgaucgcgACCCgaccgCUGAucCGcGCGCCCc -3'
miRNA:   3'- aUAGGCU--------------UGGGa----GGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11936 0.72 0.720229
Target:  5'- gGUCCGcGCCCUCCGgcGucguucucucCGGCGUCCg -3'
miRNA:   3'- aUAGGCuUGGGAGGCuuU----------GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 12035 0.68 0.870341
Target:  5'- --cCCGggUCgUcgcCCGGGuCGGCGCCCg -3'
miRNA:   3'- auaGGCuuGGgA---GGCUUuGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 15599 0.67 0.916378
Target:  5'- -uUUCGGccuCCCUCCGAuuccuGACGGCGgCa -3'
miRNA:   3'- auAGGCUu--GGGAGGCU-----UUGCCGUgGg -5'
9768 5' -54.8 NC_002577.1 + 16175 0.81 0.272033
Target:  5'- --cCUGGACCCUCCGGAcaagGCcgGGCGCCCa -3'
miRNA:   3'- auaGGCUUGGGAGGCUU----UG--CCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 18735 0.69 0.850502
Target:  5'- aUAUCCGGGCCCaaCUGcAAGCGGUaauucaagcucgaaaACCCc -3'
miRNA:   3'- -AUAGGCUUGGGa-GGC-UUUGCCG---------------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.