miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 141050 1.1 0.003615
Target:  5'- gUAUCCGAACCCUCCGAAACGGCACCCu -3'
miRNA:   3'- -AUAGGCUUGGGAGGCUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 156287 1.09 0.00404
Target:  5'- gAUCCGAACCCUCCGAAACGGCACCCu -3'
miRNA:   3'- aUAGGCUUGGGAGGCUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 16175 0.81 0.272033
Target:  5'- --cCUGGACCCUCCGGAcaagGCcgGGCGCCCa -3'
miRNA:   3'- auaGGCUUGGGAGGCUU----UG--CCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 159666 0.77 0.416256
Target:  5'- cGUCCGGAcauCCCUCCGggGaCGGUuucgcgucuACCCg -3'
miRNA:   3'- aUAGGCUU---GGGAGGCuuU-GCCG---------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 3154 0.76 0.470566
Target:  5'- cGUCUGGACUUUaCCGggGCGGCuucguCCCg -3'
miRNA:   3'- aUAGGCUUGGGA-GGCuuUGCCGu----GGG- -5'
9768 5' -54.8 NC_002577.1 + 130459 0.76 0.470566
Target:  5'- cGUCUGGACUUUaCCGggGCGGCuucguCCCg -3'
miRNA:   3'- aUAGGCUUGGGA-GGCuuUGCCGu----GGG- -5'
9768 5' -54.8 NC_002577.1 + 77157 0.74 0.598531
Target:  5'- --aCCGAugCUUCCGA--UGGCGCCUc -3'
miRNA:   3'- auaGGCUugGGAGGCUuuGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 128820 0.74 0.598531
Target:  5'- --aCCGcgugcuACCCUCgGAggggggcaugagGACGGCGCCCg -3'
miRNA:   3'- auaGGCu-----UGGGAGgCU------------UUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 4794 0.74 0.598531
Target:  5'- --aCCGcgugcuACCCUCgGAggggggcaugagGACGGCGCCCg -3'
miRNA:   3'- auaGGCu-----UGGGAGgCU------------UUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 156138 0.73 0.659788
Target:  5'- --gCCGAACCCcCCGA--CGGCGCgCa -3'
miRNA:   3'- auaGGCUUGGGaGGCUuuGCCGUGgG- -5'
9768 5' -54.8 NC_002577.1 + 141200 0.73 0.659788
Target:  5'- --gCCGAACCCcCCGA--CGGCGCgCa -3'
miRNA:   3'- auaGGCUUGGGaGGCUuuGCCGUGgG- -5'
9768 5' -54.8 NC_002577.1 + 53572 0.72 0.700287
Target:  5'- --gCCGAGCCaCUCUGcGACGGgagUACCCg -3'
miRNA:   3'- auaGGCUUGG-GAGGCuUUGCC---GUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11936 0.72 0.720229
Target:  5'- gGUCCGcGCCCUCCGgcGucguucucucCGGCGUCCg -3'
miRNA:   3'- aUAGGCuUGGGAGGCuuU----------GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 121678 0.72 0.720229
Target:  5'- gGUCCGcGCCCUCCGgcGucguucucucCGGCGUCCg -3'
miRNA:   3'- aUAGGCuUGGGAGGCuuU----------GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 136112 0.71 0.77236
Target:  5'- cGUCCGGcgccgcucuccaccgGCCCgCCcAGGCGGCGCUCu -3'
miRNA:   3'- aUAGGCU---------------UGGGaGGcUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 161226 0.71 0.77236
Target:  5'- cGUCCGGcgccgcucuccaccgGCCCgCCcAGGCGGCGCUCu -3'
miRNA:   3'- aUAGGCU---------------UGGGaGGcUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 40916 0.7 0.787171
Target:  5'- --aCCGAG-CCUCCGGAACGGggauaGCCg -3'
miRNA:   3'- auaGGCUUgGGAGGCUUUGCCg----UGGg -5'
9768 5' -54.8 NC_002577.1 + 137672 0.7 0.787171
Target:  5'- cGUCCGGAcauCCCUgCCGggGaCGGUuucgcgucuACCCg -3'
miRNA:   3'- aUAGGCUU---GGGA-GGCuuU-GCCG---------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 21800 0.7 0.787171
Target:  5'- aAUCCcgcGAACCUUCCGGGAUGGaCGCg- -3'
miRNA:   3'- aUAGG---CUUGGGAGGCUUUGCC-GUGgg -5'
9768 5' -54.8 NC_002577.1 + 28000 0.7 0.79625
Target:  5'- aAUCCGGAUUCaguaaCCGAcGCGGCACUg -3'
miRNA:   3'- aUAGGCUUGGGa----GGCUuUGCCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.