Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9768 | 5' | -54.8 | NC_002577.1 | + | 141050 | 1.1 | 0.003615 |
Target: 5'- gUAUCCGAACCCUCCGAAACGGCACCCu -3' miRNA: 3'- -AUAGGCUUGGGAGGCUUUGCCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 367 | 0.68 | 0.898021 |
Target: 5'- --cCCGAgagGCCCUaaccgccaCCGuAAACGGCccugGCCCa -3' miRNA: 3'- auaGGCU---UGGGA--------GGC-UUUGCCG----UGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 123051 | 0.68 | 0.904374 |
Target: 5'- gGUCCGuuucuGCCCUU----GCGGCGCUCu -3' miRNA: 3'- aUAGGCu----UGGGAGgcuuUGCCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 158203 | 0.66 | 0.958682 |
Target: 5'- aAUCCgGAACCCggCGGGAC-GC-CCCa -3' miRNA: 3'- aUAGG-CUUGGGagGCUUUGcCGuGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 4794 | 0.74 | 0.598531 |
Target: 5'- --aCCGcgugcuACCCUCgGAggggggcaugagGACGGCGCCCg -3' miRNA: 3'- auaGGCu-----UGGGAGgCU------------UUGCCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 156138 | 0.73 | 0.659788 |
Target: 5'- --gCCGAACCCcCCGA--CGGCGCgCa -3' miRNA: 3'- auaGGCUUGGGaGGCUuuGCCGUGgG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 136112 | 0.71 | 0.77236 |
Target: 5'- cGUCCGGcgccgcucuccaccgGCCCgCCcAGGCGGCGCUCu -3' miRNA: 3'- aUAGGCU---------------UGGGaGGcUUUGCCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 40916 | 0.7 | 0.787171 |
Target: 5'- --aCCGAG-CCUCCGGAACGGggauaGCCg -3' miRNA: 3'- auaGGCUUgGGAGGCUUUGCCg----UGGg -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 75259 | 0.7 | 0.822566 |
Target: 5'- cGUUCGAuCCCUCCGAcuUGaGCACUUa -3' miRNA: 3'- aUAGGCUuGGGAGGCUuuGC-CGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 81978 | 0.68 | 0.898021 |
Target: 5'- aAUCC--ACCCgcCCGcuuGAACGGCugCCa -3' miRNA: 3'- aUAGGcuUGGGa-GGC---UUUGCCGugGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 18735 | 0.69 | 0.850502 |
Target: 5'- aUAUCCGGGCCCaaCUGcAAGCGGUaauucaagcucgaaaACCCc -3' miRNA: 3'- -AUAGGCUUGGGa-GGC-UUUGCCG---------------UGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 130104 | 0.7 | 0.822566 |
Target: 5'- cGUgCGAcgcGCUCUCCGGAuCGGUGCCg -3' miRNA: 3'- aUAgGCU---UGGGAGGCUUuGCCGUGGg -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 16175 | 0.81 | 0.272033 |
Target: 5'- --cCUGGACCCUCCGGAcaagGCcgGGCGCCCa -3' miRNA: 3'- auaGGCUUGGGAGGCUU----UG--CCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 134402 | 0.69 | 0.855203 |
Target: 5'- cUAUCCGuucgagauGACCUUCaCGGAGCGGaGCUCg -3' miRNA: 3'- -AUAGGC--------UUGGGAG-GCUUUGCCgUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 159666 | 0.77 | 0.416256 |
Target: 5'- cGUCCGGAcauCCCUCCGggGaCGGUuucgcgucuACCCg -3' miRNA: 3'- aUAGGCUU---GGGAGGCuuU-GCCG---------UGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 154677 | 0.7 | 0.813956 |
Target: 5'- -cUCCGAGCCgaaUCaGAAGgGGCugCCg -3' miRNA: 3'- auAGGCUUGGg--AGgCUUUgCCGugGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 5412 | 0.68 | 0.898021 |
Target: 5'- gGUCCGAGCggcucuCCUCUGAuauccCGGCACggCCu -3' miRNA: 3'- aUAGGCUUG------GGAGGCUuu---GCCGUG--GG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 6594 | 0.68 | 0.903122 |
Target: 5'- --cCCGAcgucuCCCUCCGAuucaaaaguacuGCGGCACgaCCu -3' miRNA: 3'- auaGGCUu----GGGAGGCUu-----------UGCCGUG--GG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 3154 | 0.76 | 0.470566 |
Target: 5'- cGUCUGGACUUUaCCGggGCGGCuucguCCCg -3' miRNA: 3'- aUAGGCUUGGGA-GGCuuUGCCGu----GGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 121678 | 0.72 | 0.720229 |
Target: 5'- gGUCCGcGCCCUCCGgcGucguucucucCGGCGUCCg -3' miRNA: 3'- aUAGGCuUGGGAGGCuuU----------GCCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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